* using log directory ‘/srv/hornik/tmp/CRAN_pretest/TDAvec.Rcheck’
* using R Under development (unstable) (2025-02-12 r87715)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.6 (1+b1)
    Debian flang-new version 19.1.6 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘TDAvec/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TDAvec’ version ‘0.1.4’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Aleksei Luchinsky <aluchi@bgsu.edu>’

New maintainer:
  Aleksei Luchinsky <aluchi@bgsu.edu>
Old maintainer(s):
  Alexey Luchinsky <aluchi@bgsu.edu>

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Umar",
                      family = "Islambekov",
                      role = "aut"),
               person(given = "Aleksei",
                      family = "Luchinsky",
                      role = c("aut", "cre"),
                      email = "aluchi@bgsu.edu"))
as necessary.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘TDAvec’ can be installed ... [66s/66s] OK
* used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
License components which are templates and need '+ file LICENSE':
  MIT License
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'computeComplexPolynomial.Rd':
  \examples lines wider than 100 characters:
     # Compute the first 5 coefficients of the complex polynomial of type "R" for homological dimension H_0
     # Compute the first 5 coefficients of the complex polynomial of type "S" for homological dimension H_0

Rd file 'computeLimits.Rd':
  \examples lines wider than 100 characters:
     # Compute the extreme values of birth, death, and persistence across all 50 diagrams for homological dimension H_0
     # Compute the extreme values of birth, death, and persistence across all 50 diagrams for homological dimension H_1

Rd file 'computePersistenceLandscape.Rd':
  \usage lines wider than 90 characters:
     computePersistenceLandscape(D, homDim, scaleSeq, k = 1, generalized = FALSE, kernel = "triangle", h = NULL)
  \examples lines wider than 100 characters:
     # Compute vector summaries of the first three persistence landscape functions for homological dimension H_1
     # Compute vector summaries of the first three generalized persistence landscape functions (with triangle kernel and bandwidth h=0.2) fo ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... WARNING
Variables overriding user/site settings:
  CXXFLAGS: -std=c++17 -O3 -Wall
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 4 NOTEs