* using log directory ‘/srv/hornik/tmp/CRAN/TCIU.Rcheck’
* using R Under development (unstable) (2023-09-04 r85066)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (11)
    GNU Fortran (Debian 13.2.0-2) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘TCIU/DESCRIPTION’ ... OK
* this is package ‘TCIU’ version ‘1.2.3’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Yongkai Qiu <yongkai@umich.edu>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  De (24:88)
  Dinov (23:70)
  Gruyter (24:91)
  MV (23:91)
  Spacekime (2:8, 24:66)
  Velev (23:84)
  kime (21:19, 22:35)
  kimesurface (30:30)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-05-04 as issues were not corrected
    despite reminders.

Found the following (possibly) invalid URLs:
  URL: https://www.socr.umich.edu/TCIU/
    From: DESCRIPTION
    Status: Error
    Message: server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://www.socr.umich.edu/spacekime/
    From: DESCRIPTION
    Status: Error
    Message: server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TCIU’ can be installed ... [13s/13s] OK
* used C compiler: ‘Debian clang version 16.0.6 (11)’
* used Fortran compiler: ‘GNU Fortran (Debian 13.2.0-2) 13.2.0’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
compute:
  function(x, ...)
compute.LL.complex:
  function(X, yR, yI, max.iter, LL.eps, p)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/16s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  mask_label.RData      16Kb     10Kb    bzip2
  phase3_pval.RData     27Kb     22Kb       xz
  sample_save.RData    351Kb    178Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [58s/58s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs