* installing *source* package ‘TBRDist’ ...
** this is package ‘TBRDist’ version ‘2.0.0’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘Debian clang version 21.1.8 (3+b1)’
using C++17
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c rspr.cpp -o rspr.o
In file included from rspr.cpp:48:
./rspr/rspr.h:6206:10: warning: variable 'distance' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
 6206 |                                         if (k <= NO_CLUSTER_ROUNDS)
      |                                             ^~~~~~~~~~~~~~~~~~~~~~
./rspr/rspr.h:6211:10: note: uninitialized use occurs here
 6211 |                                         if (distance < 0)
      |                                             ^~~~~~~~
./rspr/rspr.h:6206:6: note: remove the 'if' if its condition is always true
 6206 |                                         if (k <= NO_CLUSTER_ROUNDS)
      |                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~
 6207 |                                                 distance = rSPR_branch_and_bound_range(F1, F2, MIN_SPR, MAX_SPR);
./rspr/rspr.h:6203:18: note: initialize the variable 'distance' to silence this warning
 6203 |                                         int distance;
      |                                                     ^
      |                                                      = 0
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c spr_lookup.cpp -o spr_lookup.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/TreeTools/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c uspr.cpp -o uspr.o
In file included from uspr.cpp:18:
In file included from ./uspr/tbr.h:45:
In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:22:
In file included from /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:63:31: warning: 'auto_ptr<boost::no_property>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   63 |     explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
      |                               ^
/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:411:18: note: in instantiation of template class 'boost::scoped_ptr<boost::no_property>' requested here
  411 |     property_ptr m_property;
      |                  ^
./uspr/tbr.h:2343:19: note: in instantiation of template class 'boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS>' requested here
 2343 |         undirected_graph G(constraints.size());
      |                          ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/c++/15/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::no_property>' has been explicitly marked deprecated here
  291 |     } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
      |       ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:120:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
  120 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
      |                                             ^
/usr/lib/gcc/x86_64-linux-gnu/15/../../../../include/x86_64-linux-gnu/c++/15/bits/c++config.h:112:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
  112 |   __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
      |                   ^
1 warning generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o TBRDist.so RcppExports.o rspr.o spr_lookup.o uspr.o -L/home/hornik/tmp/R-d-clang-21/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/TBRDist.Rcheck/00LOCK-TBRDist/00new/TBRDist/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TBRDist)