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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(SynergyLMM) > > test_check("SynergyLMM") Normality Test of Random Effects $Time Title: Shapiro - Wilk Normality Test Test Results: STATISTIC: W: 0.9678 P VALUE: 0.8702 Description: Normality Test of Time random effects Normalized Residuals Levene Homoscedasticity Test by Sample Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 9 0.5417 0.8398 80 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Sample Fligner-Killeen test of homogeneity of variances data: normalized_resid by SampleID Fligner-Killeen:med chi-squared = 5.1645, df = 9, p-value = 0.8197 Normality Test of Random Effects $Time Title: Shapiro - Wilk Normality Test Test Results: STATISTIC: W: 0.9678 P VALUE: 0.8702 Description: Normality Test of Time random effects Normalized Residuals Levene Homoscedasticity Test by Sample Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 9 0.5417 0.8398 80 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Sample Fligner-Killeen test of homogeneity of variances data: normalized_resid by SampleID Fligner-Killeen:med chi-squared = 5.1645, df = 9, p-value = 0.8197 Normality Test of Random Effects $Time Title: Shapiro - Wilk Normality Test Test Results: STATISTIC: W: 0.9678 P VALUE: 0.8702 Description: Normality Test of Time random effects Normalized Residuals Levene Homoscedasticity Test by Sample Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 9 0.5417 0.8398 80 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Sample Fligner-Killeen test of homogeneity of variances data: normalized_resid by SampleID Fligner-Killeen:med chi-squared = 5.1645, df = 9, p-value = 0.8197 Normalized Residuals Normality Test Title: Shapiro - Wilk Normality Test Test Results: STATISTIC: W: 0.7822 P VALUE: 3.211e-10 Normalized Residuals Levene Homoscedasticity Test by Time Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 8 0.5553 0.8111 81 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Time Fligner-Killeen test of homogeneity of variances data: normalized_resid by as.factor(Time) Fligner-Killeen:med chi-squared = 5.6845, df = 8, p-value = 0.6825 Normalized Residuals Levene Homoscedasticity Test by Treatment Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 3 0.9028 0.4433 86 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Treatment Fligner-Killeen test of homogeneity of variances data: normalized_resid by Treatment Fligner-Killeen:med chi-squared = 1.5828, df = 3, p-value = 0.6633 Outlier observations SampleID Time Treatment TV RTV logRTV TV0 normalized_resid 90 10 9 Drug_A 1000 8.342366 2.121347 119.8701 6.124042 Normalized Residuals Normality Test Title: Shapiro - Wilk Normality Test Test Results: STATISTIC: W: 0.7822 P VALUE: 3.211e-10 Normalized Residuals Levene Homoscedasticity Test by Time Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 8 0.5553 0.8111 81 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Time Fligner-Killeen test of homogeneity of variances data: normalized_resid by as.factor(Time) Fligner-Killeen:med chi-squared = 5.6845, df = 8, p-value = 0.6825 Normalized Residuals Levene Homoscedasticity Test by Treatment Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 3 0.9028 0.4433 86 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Treatment Fligner-Killeen test of homogeneity of variances data: normalized_resid by Treatment Fligner-Killeen:med chi-squared = 1.5828, df = 3, p-value = 0.6633 Outlier observations SampleID Time Treatment TV RTV logRTV TV0 normalized_resid 90 10 9 Drug_A 1000 8.342366 2.121347 119.8701 6.124042 Normalized Residuals Normality Test Title: Shapiro - Wilk Normality Test Test Results: STATISTIC: W: 0.7822 P VALUE: 3.211e-10 Normalized Residuals Levene Homoscedasticity Test by Time Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 8 0.5553 0.8111 81 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Time Fligner-Killeen test of homogeneity of variances data: normalized_resid by as.factor(Time) Fligner-Killeen:med chi-squared = 5.6845, df = 8, p-value = 0.6825 Normalized Residuals Levene Homoscedasticity Test by Treatment Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 3 0.9028 0.4433 86 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Treatment Fligner-Killeen test of homogeneity of variances data: normalized_resid by Treatment Fligner-Killeen:med chi-squared = 1.5828, df = 3, p-value = 0.6633 Outlier observations SampleID Time Treatment TV RTV logRTV TV0 normalized_resid 90 10 9 Drug_A 1000 8.342366 2.121347 119.8701 6.124042 Normalized Residuals Normality Test Title: Shapiro - Wilk Normality Test Test Results: STATISTIC: W: 0.7822 P VALUE: 3.211e-10 Normalized Residuals Levene Homoscedasticity Test by Time Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 8 0.5553 0.8111 81 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Time Fligner-Killeen test of homogeneity of variances data: normalized_resid by as.factor(Time) Fligner-Killeen:med chi-squared = 5.6845, df = 8, p-value = 0.6825 Normalized Residuals Levene Homoscedasticity Test by Treatment Levene's Test for Homogeneity of Variance (center = median) Df F value Pr(>F) group 3 0.9028 0.4433 86 Normalized Residuals Fligner-Killeen Homoscedasticity Test by Treatment Fligner-Killeen test of homogeneity of variances data: normalized_resid by Treatment Fligner-Killeen:med chi-squared = 1.5828, df = 3, p-value = 0.6633 Outlier observations SampleID Time Treatment TV RTV logRTV TV0 normalized_resid 90 10 9 Drug_A 1000 8.342366 2.121347 119.8701 6.124042 Random effect variances not available. Returned R2 does not account for random effects. Random effect variances not available. Returned R2 does not account for random effects. No subject with a log-likelihood displacement greater than: 3.976 [1] "Outliers with Log Likelihood displacement greater than: 4.977" 4 6.55449 No subject with a log-likelihood displacement greater than: 1000 [1] "Outliers with Log Likelihood displacement greater than: -1000" 1 2 3 4 5 6 7 0.08258159 2.00421829 3.20399631 1.04719077 0.29520400 1.85948923 3.28403183 8 9 10 1.09210541 0.36262353 0.02277539 No subject with a log-likelihood displacement greater than: 3.976 No subject with a Cook's distance greater than: 0.919 No subject with a Cook's distance greater than: 0.582 [1] "Subjects with Cook's distance greater than: -10" 1 2 3 4 5 6 0.0097363880 0.4406576193 0.8019684428 0.2264886706 0.0670661290 0.4616129833 7 8 9 10 0.8019684428 0.2264886706 0.0256954978 0.0002433785 No subject with a Cook's distance greater than: 0.919 `geom_line()`: Each group consists of only one observation. i Do you need to adjust the group aesthetic? Some Combination Index values were infinite (+Inf) due to zero denominators for time: 2. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 6. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 1. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 2. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 3. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 4. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 5. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 6. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 7. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 8. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 9. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 1. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 2. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 3. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 4. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 5. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 6. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 7. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 8. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 9. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 3. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 4. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 5. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 6. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 7. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 8. These values have been capped at a maximum of 100 to preserve interpretability. Some Combination Index values were infinite (+Inf) due to zero denominators for time: 9. These values have been capped at a maximum of 100 to preserve interpretability. [ FAIL 0 | WARN 1357 | SKIP 0 | PASS 329 ] [ FAIL 0 | WARN 1357 | SKIP 0 | PASS 329 ] > > proc.time() user system elapsed 244.48 4.70 249.32