* installing *source* package 'SurvivalBayes' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c settingInterval.cpp -o settingInterval.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c updateRP_genomic_cpp.cpp -o updateRP_genomic_cpp.o
updateRP_genomic_cpp.cpp: In function 'Rcpp::List updateBH_list_cpp(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::List, double)':
updateRP_genomic_cpp.cpp:69:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   69 |     for (unsigned int g = 0; g < S; ++g)
      |                              ~~^~~
updateRP_genomic_cpp.cpp:83:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
   83 |         for (unsigned int j = 0; j < J_tmp; ++j)
      |                                  ~~^~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o SurvivalBayes.dll tmp.def RcppExports.o init.o settingInterval.o updateRP_genomic_cpp.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: init.o:init.c:(.rdata+0x108): undefined reference to `_BayesSurvive_calJpost_helper_cpp'
D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: init.o:init.c:(.rdata+0x120): undefined reference to `_BayesSurvive_matProdVec'
D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: init.o:init.c:(.rdata+0x138): undefined reference to `_BayesSurvive_settingInterval_cpp'
D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: init.o:init.c:(.rdata+0x150): undefined reference to `_BayesSurvive_sumMatProdVec'
D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: init.o:init.c:(.rdata+0x168): undefined reference to `_BayesSurvive_updateBH_cpp'
D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: init.o:init.c:(.rdata+0x180): undefined reference to `_BayesSurvive_updateBH_list_cpp'
D:\rtools44\x86_64-w64-mingw32.static.posix\bin/ld.exe: init.o:init.c:(.rdata+0x198): undefined reference to `_BayesSurvive_updateRP_genomic_cpp'
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'SurvivalBayes'
* removing 'd:/RCompile/CRANincoming/R-devel/lib/SurvivalBayes'