* using log directory ‘/srv/hornik/tmp/CRAN/Surrogate.Rcheck’ * using R Under development (unstable) (2023-08-30 r85030) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (10) GNU Fortran (Debian 13.2.0-1) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘Surrogate/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Surrogate’ version ‘3.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/4s] Note_to_CRAN_maintainers Maintainer: ‘Wim Van der Elst ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘Surrogate’ can be installed ... [18s/18s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Mismatches for apparent methods not registered: print: function(x, ...) print.vine_copula_SurvSurv_fit: function(fitted_model) See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [38s/38s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [38s/38s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [160s/170s] ERROR Running ‘testthat.R’ [160s/170s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(Surrogate) > > test_check("Surrogate") [1] "Starting parallel simulations" [1] "Finishing parallel simulations" [ FAIL 1 | WARN 0 | SKIP 0 | PASS 37 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-fit_model_BinCont_copula.R:195:3'): fit_model_binCont_copula() works with clayton copula and normal margins and full ML estimator ── coef(full_model$submodel0$ml_fit) (`actual`) not equal to `coefs_check` (`expected`). `actual`: -0.043222 -16.633294 28.631035 3.143644 `expected`: -0.043232 -16.633655 28.630911 3.143638 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 37 ] Error: Test failures Execution halted * checking PDF version of manual ... [6s/6s] OK * checking HTML version of manual ... [6s/5s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE