installing dependencies ‘arm’, ‘bartMachine’, ‘biglasso’, ‘bigmemory’,
‘caret’, ‘cvAUC’, ‘devtools’, ‘e1071’, ‘earth’, ‘gam’, ‘gbm’,
‘genefilter’, ‘ggplot2’, ‘glmnet’, ‘ipred’, ‘KernelKnn’, ‘kernlab’,
‘knitr’, ‘LogicReg’, ‘mlbench’, ‘nloptr’, ‘nnls’, ‘party’,
‘polspline’, ‘prettydoc’, ‘quadprog’, ‘randomForest’, ‘ranger’,
‘RhpcBLASctl’, ‘rmarkdown’, ‘ROCR’, ‘SIS’, ‘speedglm’, ‘spls’, ‘sva’,
‘testthat’, ‘xgboost’
also installing the dependencies ‘listenv’, ‘parallelly’, ‘utf8’, ‘bit’, ‘XVector’, ‘Seqinfo’, ‘future’, ‘globals’, ‘formatR’, ‘rbibutils’, ‘rngtools’, ‘pillar’, ‘tzdb’, ‘timechange’, ‘pkgconfig’, ‘askpass’, ‘credentials’, ‘sys’, ‘zip’, ‘gitcreds’, ‘ini’, ‘httpuv’, ‘later’, ‘otel’, ‘promises’, ‘sourcetools’, ‘fansi’, ‘systemfonts’, ‘textshaping’, ‘bit64’, ‘blob’, ‘plogr’, ‘png’, ‘Biostrings’, ‘future.apply’, ‘numDeriv’, ‘progressr’, ‘SQUAREM’, ‘TH.data’, ‘bitops’, ‘lambda.r’, ‘futile.options’, ‘minqa’, ‘reformulas’, ‘Rdpack’, ‘iterators’, ‘itertools’, ‘doRNG’, ‘dplyr’, ‘clock’, ‘generics’, ‘glue’, ‘gower’, ‘hardhat’, ‘lubridate’, ‘purrr’, ‘sparsevctrs’, ‘tibble’, ‘tidyr’, ‘tidyselect’, ‘timeDate’, ‘stringr’, ‘clipr’, ‘crayon’, ‘curl’, ‘gert’, ‘gh’, ‘rappdirs’, ‘rprojroot’, ‘rstudioapi’, ‘whisker’, ‘cachem’, ‘shiny’, ‘downlit’, ‘httr2’, ‘openssl’, ‘ragg’, ‘xml2’, ‘htmlwidgets’, ‘digest’, ‘prettyunits’, ‘xopen’, ‘brew’, ‘commonmark’, ‘stringi’, ‘cpp11’, ‘plotrix’, ‘BiocGenerics’, ‘IRanges’, ‘DBI’, ‘RSQLite’, ‘S4Vectors’, ‘KEGGREST’, ‘XML’, ‘xtable’, ‘httr’, ‘farver’, ‘labeling’, ‘RColorBrewer’, ‘viridisLite’, ‘diagram’, ‘lava’, ‘libcoin’, ‘multcomp’, ‘gtools’, ‘caTools’, ‘base64enc’, ‘fastmap’, ‘mime’, ‘sass’, ‘futile.logger’, ‘snow’, ‘statmod’, ‘locfit’, ‘diffobj’, ‘data.table’, ‘lme4’, ‘abind’, ‘coda’, ‘rJava’, ‘bartMachineJARs’, ‘missForest’, ‘ncvreg’, ‘Rcpp’, ‘RcppArmadillo’, ‘BH’, ‘bigmemory.sri’, ‘uuid’, ‘foreach’, ‘ModelMetrics’, ‘plyr’, ‘pROC’, ‘recipes’, ‘reshape2’, ‘withr’, ‘usethis’, ‘cli’, ‘desc’, ‘ellipsis’, ‘fs’, ‘lifecycle’, ‘memoise’, ‘miniUI’, ‘pkgbuild’, ‘pkgdown’, ‘pkgload’, ‘profvis’, ‘rcmdcheck’, ‘remotes’, ‘rlang’, ‘roxygen2’, ‘rversions’, ‘sessioninfo’, ‘urlchecker’, ‘proxy’, ‘Formula’, ‘plotmo’, ‘MatrixGenerics’, ‘AnnotationDbi’, ‘annotate’, ‘Biobase’, ‘gtable’, ‘isoband’, ‘S7’, ‘scales’, ‘vctrs’, ‘shape’, ‘RcppEigen’, ‘prodlim’, ‘evaluate’, ‘highr’, ‘xfun’, ‘yaml’, ‘mvtnorm’, ‘modeltools’, ‘strucchange’, ‘coin’, ‘zoo’, ‘sandwich’, ‘gplots’, ‘bslib’, ‘fontawesome’, ‘htmltools’, ‘jquerylib’, ‘jsonlite’, ‘tinytex’, ‘biglm’, ‘pls’, ‘BiocParallel’, ‘matrixStats’, ‘limma’, ‘edgeR’, ‘brio’, ‘callr’, ‘magrittr’, ‘praise’, ‘processx’, ‘ps’, ‘R6’, ‘waldo’
begin installing package ‘listenv’
begin installing package ‘parallelly’
begin installing package ‘utf8’
begin installing package ‘bit’
begin installing package ‘formatR’
begin installing package ‘globals’
begin installing package ‘rbibutils’
begin installing package ‘pkgconfig’
begin installing package ‘sys’
begin installing package ‘zip’
begin installing package ‘gitcreds’
begin installing package ‘ini’
begin installing package ‘otel’
begin installing package ‘sourcetools’
begin installing package ‘fansi’
begin installing package ‘plogr’
begin installing package ‘png’
begin installing package ‘numDeriv’
begin installing package ‘SQUAREM’
begin installing package ‘TH.data’
begin installing package ‘bitops’
begin installing package ‘futile.options’
begin installing package ‘iterators’
begin installing package ‘generics’
begin installing package ‘glue’
begin installing package ‘gower’
begin installing package ‘timeDate’
begin installing package ‘clipr’
* installing *source* package ‘ini’ ...
** this is package ‘ini’ version ‘0.3.1’
** package ‘ini’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ini)
begin installing package ‘crayon’
* installing *source* package ‘plogr’ ...
** this is package ‘plogr’ version ‘0.2.0’
** package ‘plogr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plogr)
begin installing package ‘curl’
* installing *source* package ‘pkgconfig’ ...
** this is package ‘pkgconfig’ version ‘2.0.3’
** package ‘pkgconfig’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgconfig)
begin installing package ‘rappdirs’
* installing *source* package ‘futile.options’ ...
** this is package ‘futile.options’ version ‘1.0.1’
** package ‘futile.options’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (futile.options)
begin installing package ‘rprojroot’
* installing *source* package ‘clipr’ ...
** this is package ‘clipr’ version ‘0.8.0’
** package ‘clipr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clipr)
begin installing package ‘rstudioapi’
* installing *source* package ‘bitops’ ...
** this is package ‘bitops’ version ‘1.0-9’
** package ‘bitops’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpp0okA3/R.INSTALL1fdb907d7249e3/bitops/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bit-ops.c -o bit-ops.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cksum.c -o cksum.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o bitops.so bit-ops.o cksum.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp0okA3/R.INSTALL1fdb907d7249e3/bitops/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-bitops/00new/bitops/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bitops)
begin installing package ‘whisker’
* installing *source* package ‘sys’ ...
** this is package ‘sys’ version ‘3.4.3’
** package ‘sys’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyFiRJd/R.INSTALL1fdb60243df4ff/sys/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c exec.c -o exec.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o sys.so exec.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyFiRJd/R.INSTALL1fdb60243df4ff/sys/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-sys/00new/sys/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sys)
begin installing package ‘digest’
* installing *source* package ‘gower’ ...
** this is package ‘gower’ version ‘1.0.2’
** package ‘gower’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPOREzV/R.INSTALL1fdba0579e8db1/gower/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_register_native.c -o R_register_native.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c gower.c -o gower.o
gower.c: In function ‘gower_logi’:
gower.c:100: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
100 | #pragma omp parallel num_threads(NTHREAD)
gower.c: In function ‘gower_cat’:
gower.c:134: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
134 | #pragma omp parallel num_threads(NTHREAD)
gower.c: In function ‘gower_str’:
gower.c:165: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
165 | #pragma omp parallel num_threads(NTHREAD)
gower.c: In function ‘gower_num’:
gower.c:205: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
205 | #pragma omp parallel num_threads(NTHREAD)
gower.c: In function ‘gower_dbl_int’:
gower.c:245: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
245 | #pragma omp parallel num_threads(NTHREAD)
gower.c: In function ‘gower_int’:
gower.c:280: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
280 | #pragma omp parallel num_threads(NTHREAD)
gower.c: In function ‘get_dbl_range’:
gower.c:329: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
329 | #pragma omp parallel num_threads(NTHREAD)
gower.c:333: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
333 | #pragma omp for reduction(min:imin), reduction(max:imax)
gower.c: In function ‘get_int_range’:
gower.c:367: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
367 | #pragma omp parallel for reduction(min:imin), reduction(max:imax)
gower.c: In function ‘R_gower_topn’:
gower.c:679: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
679 | #pragma omp parallel num_threads(NTHREAD)
gower.c:681: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
681 | #pragma omp for schedule(static)
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o gower.so R_register_native.o gower.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPOREzV/R.INSTALL1fdba0579e8db1/gower/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-gower/00new/gower/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gower)
begin installing package ‘prettyunits’
* installing *source* package ‘gitcreds’ ...
** this is package ‘gitcreds’ version ‘0.1.2’
** package ‘gitcreds’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gitcreds)
begin installing package ‘brew’
* installing *source* package ‘png’ ...
** this is package ‘png’ version ‘0.1-8’
** package ‘png’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsogcXp/R.INSTALL1fdb8956243f1b/png/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dummy.c -o dummy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c read.c -o read.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 `libpng-config --cflags` -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c write.c -o write.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o png.so dummy.o read.o write.o -lpng16 -lz -lm -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsogcXp/R.INSTALL1fdb8956243f1b/png/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-png/00new/png/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (png)
begin installing package ‘commonmark’
* installing *source* package ‘formatR’ ...
** this is package ‘formatR’ version ‘1.14’
** package ‘formatR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (formatR)
begin installing package ‘stringi’
* installing *source* package ‘numDeriv’ ...
** this is package ‘numDeriv’ version ‘2016.8-1.1’
** package ‘numDeriv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (numDeriv)
begin installing package ‘cpp11’
* installing *source* package ‘generics’ ...
** this is package ‘generics’ version ‘0.1.4’
** package ‘generics’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (generics)
begin installing package ‘plotrix’
* installing *source* package ‘iterators’ ...
** this is package ‘iterators’ version ‘1.0.14’
** package ‘iterators’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iterators)
begin installing package ‘DBI’
* installing *source* package ‘SQUAREM’ ...
** this is package ‘SQUAREM’ version ‘2021.1’
** package ‘SQUAREM’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SQUAREM)
begin installing package ‘XML’
* installing *source* package ‘glue’ ...
** this is package ‘glue’ version ‘1.8.0’
** package ‘glue’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvf8lmS/R.INSTALL1fdb9c7609a7d4/glue/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c glue.c -o glue.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c trim.c -o trim.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvf8lmS/R.INSTALL1fdb9c7609a7d4/glue/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-glue/00new/glue/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glue)
begin installing package ‘xtable’
* installing *source* package ‘listenv’ ...
** this is package ‘listenv’ version ‘0.10.0’
** package ‘listenv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (listenv)
begin installing package ‘farver’
* installing *source* package ‘sourcetools’ ...
** this is package ‘sourcetools’ version ‘0.1.7-1’
** package ‘sourcetools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuRkBro/R.INSTALL1fdb743923c609/sourcetools/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Reader.cpp -o Reader.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Tokenizer.cpp -o Tokenizer.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sourcetools-init.c -o sourcetools-init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuRkBro/R.INSTALL1fdb743923c609/sourcetools/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-sourcetools/00new/sourcetools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sourcetools)
begin installing package ‘labeling’
* installing *source* package ‘globals’ ...
** this is package ‘globals’ version ‘0.18.0’
** package ‘globals’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (globals)
begin installing package ‘RColorBrewer’
* installing *source* package ‘rappdirs’ ...
** this is package ‘rappdirs’ version ‘0.3.3’
** package ‘rappdirs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpctatWR/R.INSTALL1fdf4839919def/rappdirs/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c win-path.c -o win-path.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o rappdirs.so init.o win-path.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpctatWR/R.INSTALL1fdf4839919def/rappdirs/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-rappdirs/00new/rappdirs/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rappdirs)
begin installing package ‘viridisLite’
* installing *source* package ‘brew’ ...
** this is package ‘brew’ version ‘1.0-10’
** package ‘brew’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brew)
begin installing package ‘gtools’
* installing *source* package ‘whisker’ ...
** this is package ‘whisker’ version ‘0.4.1’
** package ‘whisker’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (whisker)
begin installing package ‘base64enc’
* installing *source* package ‘otel’ ...
** this is package ‘otel’ version ‘0.2.0’
** package ‘otel’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (otel)
begin installing package ‘fastmap’
* installing *source* package ‘rprojroot’ ...
** this is package ‘rprojroot’ version ‘2.1.1’
** package ‘rprojroot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rprojroot)
begin installing package ‘mime’
* installing *source* package ‘cpp11’ ...
** this is package ‘cpp11’ version ‘0.5.2’
** package ‘cpp11’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cpp11)
begin installing package ‘snow’
* installing *source* package ‘utf8’ ...
** this is package ‘utf8’ version ‘1.2.6’
** package ‘utf8’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJZ2c9G/R.INSTALL1fdb47245bc225/utf8/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c as_utf8.c -o as_utf8.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bytes.c -o bytes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c context.c -o context.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c render.c -o render.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c render_table.c -o render_table.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c string.c -o string.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c text.c -o text.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_encode.c -o utf8_encode.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_format.c -o utf8_format.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_normalize.c -o utf8_normalize.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_valid.c -o utf8_valid.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8_width.c -o utf8_width.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c util.c -o util.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/array.c -o utf8lite/src/array.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/char.c -o utf8lite/src/char.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/encode.c -o utf8lite/src/encode.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/error.c -o utf8lite/src/error.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/escape.c -o utf8lite/src/escape.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/graph.c -o utf8lite/src/graph.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/render.c -o utf8lite/src/render.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/text.c -o utf8lite/src/text.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o
ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJZ2c9G/R.INSTALL1fdb47245bc225/utf8/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-utf8/00new/utf8/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (utf8)
begin installing package ‘statmod’
* installing *source* package ‘rstudioapi’ ...
** this is package ‘rstudioapi’ version ‘0.17.1’
** package ‘rstudioapi’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rstudioapi)
begin installing package ‘locfit’
* installing *source* package ‘prettyunits’ ...
** this is package ‘prettyunits’ version ‘1.2.0’
** package ‘prettyunits’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prettyunits)
begin installing package ‘data.table’
* installing *source* package ‘TH.data’ ...
** this is package ‘TH.data’ version ‘1.1-5’
** package ‘TH.data’ successfully unpacked and MD5 sums checked
** using staged installation
** data
*** moving datasets to lazyload DB
** demo
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TH.data)
begin installing package ‘abind’
* installing *source* package ‘crayon’ ...
** this is package ‘crayon’ version ‘1.5.3’
** package ‘crayon’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crayon)
begin installing package ‘coda’
* installing *source* package ‘viridisLite’ ...
** this is package ‘viridisLite’ version ‘0.4.2’
** package ‘viridisLite’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (viridisLite)
begin installing package ‘rJava’
* installing *source* package ‘fansi’ ...
** this is package ‘fansi’ version ‘1.0.7’
** package ‘fansi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3btDHV/R.INSTALL1fdb7f35635644/fansi/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c assumptions.c -o assumptions.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c carry.c -o carry.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c has.c -o has.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nchar.c -o nchar.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c normalize.c -o normalize.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c read.c -o read.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c state.c -o state.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c strip.c -o strip.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c substr.c -o substr.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tabs.c -o tabs.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tohtml.c -o tohtml.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c trimws.c -o trimws.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unhandled.c -o unhandled.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8.c -o utf8.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c width.c -o width.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c wrap.c -o wrap.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c write.c -o write.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o fansi.so assumptions.o carry.o has.o init.o nchar.o normalize.o read.o state.o strip.o substr.o tabs.o tohtml.o trimws.o unhandled.o utf8.o utils.o width.o wrap.o write.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3btDHV/R.INSTALL1fdb7f35635644/fansi/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-fansi/00new/fansi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fansi)
begin installing package ‘ncvreg’
* installing *source* package ‘xtable’ ...
** this is package ‘xtable’ version ‘1.8-4’
** package ‘xtable’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xtable)
begin installing package ‘Rcpp’
* installing *source* package ‘base64enc’ ...
** this is package ‘base64enc’ version ‘0.1-3’
** package ‘base64enc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcfuWrE/R.INSTALL1feab6680ef21d/base64enc/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c base64.c -o base64.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c uriencode.c -o uriencode.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8.c -o utf8.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o base64enc.so base64.o uriencode.o utf8.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcfuWrE/R.INSTALL1feab6680ef21d/base64enc/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-base64enc/00new/base64enc/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (base64enc)
begin installing package ‘BH’
* installing *source* package ‘mime’ ...
** this is package ‘mime’ version ‘0.13’
** package ‘mime’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeZANaY/R.INSTALL1feadf43091867/mime/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rawmatch.c -o rawmatch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o mime.so init.o rawmatch.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeZANaY/R.INSTALL1feadf43091867/mime/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-mime/00new/mime/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mime)
begin installing package ‘bigmemory.sri’
* installing *source* package ‘labeling’ ...
** this is package ‘labeling’ version ‘0.4.3’
** package ‘labeling’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (labeling)
begin installing package ‘uuid’
* installing *source* package ‘RColorBrewer’ ...
** this is package ‘RColorBrewer’ version ‘1.1-3’
** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RColorBrewer)
begin installing package ‘withr’
* installing *source* package ‘curl’ ...
** this is package ‘curl’ version ‘7.0.0’
** package ‘curl’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1
Using PKG_LIBS=-lcurl
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprzmpHR/R.INSTALL1fdf2c55c06828/curl/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c callbacks.c -o callbacks.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c curl.c -o curl.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c download.c -o download.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dryrun.c -o dryrun.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c escape.c -o escape.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fetch.c -o fetch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c findport.c -o findport.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c form.c -o form.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c getdate.c -o getdate.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c handle.c -o handle.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ieproxy.c -o ieproxy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c interrupt.c -o interrupt.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c multi.c -o multi.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nslookup.c -o nslookup.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c options.c -o options.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c reflist.c -o reflist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c split.c -o split.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ssl.c -o ssl.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c typechecking.c -o typechecking.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c urlparser.c -o urlparser.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c version.c -o version.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c winidn.c -o winidn.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c writer.c -o writer.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o curl.so callbacks.o curl.o download.o dryrun.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o -lcurl -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprzmpHR/R.INSTALL1fdf2c55c06828/curl/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-curl/00new/curl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (curl)
begin installing package ‘cli’
* installing *source* package ‘parallelly’ ...
** this is package ‘parallelly’ version ‘1.46.0’
** package ‘parallelly’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGjNLM2/R.INSTALL1fdb3a5d5eeb34/parallelly/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c 000.init.c -o 000.init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c calc-serialized-size.c -o calc-serialized-size.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c test_tcp_port.c -o test_tcp_port.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o parallelly.so 000.init.o calc-serialized-size.o test_tcp_port.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGjNLM2/R.INSTALL1fdb3a5d5eeb34/parallelly/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-parallelly/00new/parallelly/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (parallelly)
begin installing package ‘fs’
* installing *source* package ‘snow’ ...
** this is package ‘snow’ version ‘0.4-4’
** package ‘snow’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (snow)
begin installing package ‘remotes’
* installing *source* package ‘abind’ ...
** this is package ‘abind’ version ‘1.4-8’
** package ‘abind’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (abind)
begin installing package ‘rlang’
* installing *source* package ‘bigmemory.sri’ ...
** this is package ‘bigmemory.sri’ version ‘0.1.8’
** package ‘bigmemory.sri’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigmemory.sri)
begin installing package ‘proxy’
* installing *source* package ‘gtools’ ...
** this is package ‘gtools’ version ‘3.9.5’
** package ‘gtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMmOlnB/R.INSTALL1fea99329efeaf/gtools/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c roman2int.c -o roman2int.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c setTCPNoDelay.c -o setTCPNoDelay.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o gtools.so init.o roman2int.o setTCPNoDelay.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMmOlnB/R.INSTALL1fea99329efeaf/gtools/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-gtools/00new/gtools/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gtools)
begin installing package ‘Formula’
* installing *source* package ‘BH’ ...
** this is package ‘BH’ version ‘1.90.0-1’
** package ‘BH’ successfully unpacked and MD5 sums checked
** using staged installation
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BH)
begin installing package ‘S7’
* installing *source* package ‘withr’ ...
** this is package ‘withr’ version ‘3.0.2’
** package ‘withr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (withr)
begin installing package ‘shape’
* installing *source* package ‘DBI’ ...
** this is package ‘DBI’ version ‘1.2.3’
** package ‘DBI’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DBI)
begin installing package ‘evaluate’
* installing *source* package ‘Formula’ ...
** this is package ‘Formula’ version ‘1.2-5’
** package ‘Formula’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Formula)
begin installing package ‘xfun’
* installing *source* package ‘uuid’ ...
** this is package ‘uuid’ version ‘1.2-1’
** package ‘uuid’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer accepts -g... yes
checking for gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grp.h... yes
checking for langinfo.h... yes
checking for locale.h... yes
checking for netinet/in.h... yes
checking for stdlib.h... (cached) yes
checking for sys/file.h... yes
checking for sys/ioctl.h... yes
checking for sys/socket.h... yes
checking for sys/sockio.h... no
checking for sys/syscall.h... yes
checking for sys/sendfile.h... yes
checking for sys/time.h... yes
checking for sys/un.h... yes
checking for unistd.h... (cached) yes
checking for net/if.h... yes
checking for net/if_dl.h... no
checking for dirfd... yes
checking for err... yes
checking for errx... yes
checking for getexecname... no
checking for getrandom... yes
checking for jrand48... yes
checking for llseek... no
checking for lchown... yes
checking for mempcpy... yes
checking for mkostemp... yes
checking for nanosleep... yes
checking for sendfile... yes
checking for srandom... yes
checking for strnchr... no
checking for strndup... yes
checking for strnlen... yes
checking for usleep... yes
checking for warn... yes
checking for warnx... yes
checking for flock... yes
checking for struct sockaddr.sa_len... no
checking for dlfcn.h... yes
checking for library containing dlsym... none required
checking for thread local storage (TLS) support... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppY9DMm/R.INSTALL1ff2406796c3c/uuid/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R.c -o R.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Ruuid.c -o Ruuid.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c clear.c -o clear.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c compare.c -o compare.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c copy.c -o copy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c gen_uuid.c -o gen_uuid.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c isnull.c -o isnull.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c md5.c -o md5.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pack.c -o pack.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c parse.c -o parse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rand.c -o rand.o
rand.c: In function ‘load_rand’:
rand.c:104:21: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
104 | if (!(fn_rand = (rand_t) dlsym(RTLD_DEFAULT, "rand")) ||
| ^
rand.c:109:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
109 | !(fn_random = (random_t) dlsym(RTLD_DEFAULT, "random")) ||
| ^
rand.c:110:24: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
110 | !(fn_srandom = (srandom_t) dlsym(RTLD_DEFAULT, "srandom")) ||
| ^
rand.c:112:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
112 | !(fn_srand = (srand_t) dlsym(RTLD_DEFAULT, "srand")))
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c randutils.c -o randutils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha1.c -o sha1.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unpack.c -o unpack.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -include config.h -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unparse.c -o unparse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o uuid.so R.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o md5.o pack.o parse.o rand.o randutils.o sha1.o unpack.o unparse.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppY9DMm/R.INSTALL1ff2406796c3c/uuid/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-uuid/00new/uuid/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (uuid)
begin installing package ‘yaml’
* installing *source* package ‘fastmap’ ...
** this is package ‘fastmap’ version ‘1.2.0’
** package ‘fastmap’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkVx2ne/R.INSTALL1fead7177e6c5d/fastmap/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fastmap.cpp -o fastmap.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o fastmap.so fastmap.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkVx2ne/R.INSTALL1fead7177e6c5d/fastmap/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-fastmap/00new/fastmap/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastmap)
begin installing package ‘mvtnorm’
* installing *source* package ‘bit’ ...
** this is package ‘bit’ version ‘4.6.0’
** package ‘bit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpT3UhD3/R.INSTALL1fdb465733c0b1/bit/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c attrutil.c -o attrutil.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bit.c -o bit.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c chunkutil.c -o chunkutil.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c clone.c -o clone.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c integerutil.c -o integerutil.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c merge.c -o merge.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rle.c -o rle.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sort.c -o sort.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o bit.so attrutil.o bit.o chunkutil.o clone.o init.o integerutil.o merge.o rle.o sort.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpT3UhD3/R.INSTALL1fdb465733c0b1/bit/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-bit/00new/bit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bit)
begin installing package ‘modeltools’
* installing *source* package ‘coda’ ...
** this is package ‘coda’ version ‘0.19-4.1’
** package ‘coda’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coda)
begin installing package ‘zoo’
* installing *source* package ‘statmod’ ...
** this is package ‘statmod’ version ‘1.5.1’
** package ‘statmod’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpX594rI/R.INSTALL1febe745e87614/statmod/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c expectedDeviance.c -o expectedDeviance.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c gaussq2.f -o gaussq2.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o statmod.so expectedDeviance.o gaussq2.o init.o -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpX594rI/R.INSTALL1febe745e87614/statmod/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-statmod/00new/statmod/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (statmod)
begin installing package ‘jsonlite’
* installing *source* package ‘proxy’ ...
** this is package ‘proxy’ version ‘0.4-28’
** package ‘proxy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsgCze9/R.INSTALL1ffb8de5c6b98/proxy/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c apply.c -o apply.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c arrayIndex.c -o arrayIndex.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c distance.c -o distance.o
distance.c: In function ‘ebinary’:
distance.c:428:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
428 | if (ISNAN(xy))
| ^
distance.c: In function ‘cosine’:
distance.c:475:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
475 | if (ISNAN(xy))
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dll.c -o dll.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c util.c -o util.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o proxy.so apply.o arrayIndex.o distance.o dll.o util.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsgCze9/R.INSTALL1ffb8de5c6b98/proxy/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-proxy/00new/proxy/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (proxy)
begin installing package ‘pls’
* installing *source* package ‘rbibutils’ ...
** this is package ‘rbibutils’ version ‘2.4’
** package ‘rbibutils’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSEpzrK/R.INSTALL1fdb592bcf4c75/rbibutils/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c adsout.c -o adsout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c any2xml.c -o any2xml.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c args.c -o args.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bib2be.c -o bib2be.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibcore.c -o bibcore.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibentrydirectout.c -o bibentrydirectout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibentryout.c -o bibentryout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibl.c -o bibl.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c biblatexin.c -o biblatexin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c biblatexout.c -o biblatexout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibprog.c -o bibprog.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibtexdirectin.c -o bibtexdirectin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibtexin.c -o bibtexin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibtexout.c -o bibtexout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibtextypes.c -o bibtextypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bibutils.c -o bibutils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bltypes.c -o bltypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bu_auth.c -o bu_auth.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c charsets.c -o charsets.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c common_be_bed.c -o common_be_bed.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c common_bt_blt_btd_out.c -o common_bt_blt_btd_out.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c common_bt_btd.c -o common_bt_btd.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c common_bt_btd_blt.c -o common_bt_btd_blt.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c common_bt_btd_out.c -o common_bt_btd_out.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c common_most.c -o common_most.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c copacin.c -o copacin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c copactypes.c -o copactypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ebiin.c -o ebiin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c endin.c -o endin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c endout.c -o endout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c endtypes.c -o endtypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c endxmlin.c -o endxmlin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c entities.c -o entities.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fields.c -o fields.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c gb18030.c -o gb18030.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c generic.c -o generic.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c intlist.c -o intlist.o
intlist.c:27:1: warning: ‘intlist_validn’ defined but not used [-Wunused-function]
27 | intlist_validn( intlist *il, int n )
| ^~~~~~~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c is_ws.c -o is_ws.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c isiin.c -o isiin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c isiout.c -o isiout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c isitypes.c -o isitypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c iso639_1.c -o iso639_1.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c iso639_2.c -o iso639_2.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c iso639_3.c -o iso639_3.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c latex.c -o latex.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c latex_parse.c -o latex_parse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c marc_auth.c -o marc_auth.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c medin.c -o medin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c modsin.c -o modsin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c modsout.c -o modsout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c modstypes.c -o modstypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c name.c -o name.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nbibin.c -o nbibin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nbibout.c -o nbibout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nbibtypes.c -o nbibtypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c notes.c -o notes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pages.c -o pages.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c reftypes.c -o reftypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c risin.c -o risin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c risout.c -o risout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ristypes.c -o ristypes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c serialno.c -o serialno.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slist.c -o slist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c str.c -o str.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c str_conv.c -o str_conv.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c strsearch.c -o strsearch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c title.c -o title.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tomods.c -o tomods.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type.c -o type.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unicode.c -o unicode.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c url.c -o url.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utf8.c -o utf8.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vplist.c -o vplist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c wordin.c -o wordin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c wordout.c -o wordout.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xml.c -o xml.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xml2any.c -o xml2any.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xml_encoding.c -o xml_encoding.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o rbibutils.so adsout.o any2xml.o args.o bib2be.o bibcore.o bibentrydirectout.o bibentryout.o bibl.o biblatexin.o biblatexout.o bibprog.o bibtexdirectin.o bibtexin.o bibtexout.o bibtextypes.o bibutils.o bltypes.o bu_auth.o charsets.o common_be_bed.o common_bt_blt_btd_out.o common_bt_btd.o common_bt_btd_blt.o common_bt_btd_out.o common_most.o copacin.o copactypes.o ebiin.o endin.o endout.o endtypes.o endxmlin.o entities.o fields.o gb18030.o generic.o init.o intlist.o is_ws.o isiin.o isiout.o isitypes.o iso639_1.o iso639_2.o iso639_3.o latex.o latex_parse.o marc_auth.o medin.o modsin.o modsout.o modstypes.o name.o nbibin.o nbibout.o nbibtypes.o notes.o pages.o reftypes.o risin.o risout.o ristypes.o serialno.o slist.o str.o str_conv.o strsearch.o title.o tomods.o type.o unicode.o url.o utf8.o vplist.o wordin.o wordout.o xml.o xml2any.o xml_encoding.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSEpzrK/R.INSTALL1fdb592bcf4c75/rbibutils/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-rbibutils/00new/rbibutils/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rbibutils)
begin installing package ‘matrixStats’
* installing *source* package ‘shape’ ...
** this is package ‘shape’ version ‘1.4.6.1’
** package ‘shape’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shape)
begin installing package ‘brio’
* installing *source* package ‘ncvreg’ ...
** this is package ‘ncvreg’ version ‘3.16.0’
** package ‘ncvreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfcMquH/R.INSTALL1fef5611c63414/ncvreg/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cox-dh.c -o cox-dh.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c gaussian.c -o gaussian.o
gaussian.c: In function ‘cdfit_gaussian’:
gaussian.c:118:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized]
118 | for (int j=0; j
(cutoff * alpha * m[j])) e2[j] = 1;
| ~~~~~~~^~~~~~~
gaussian.c:76:10: note: ‘cutoff’ was declared here
76 | double cutoff, l1, l2;
| ^~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c glm.c -o glm.o
glm.c: In function ‘cdfit_glm’:
glm.c:152:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized]
152 | for (int j=0; j
(cutoff * alpha * m[j])) e2[j] = 1;
| ~~~~~~~^~~~~~~
glm.c:91:42: note: ‘cutoff’ was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~~~~~
glm.c:200:24: warning: ‘si’ may be used uninitialized [-Wmaybe-uninitialized]
200 | max_change = fabs(si)*xwx/n;
| ^~~~~~~~
glm.c:91:65: note: ‘si’ was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c maxprod.c -o maxprod.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c mfdr_binomial.c -o mfdr_binomial.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c mfdr_cox.c -o mfdr_cox.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c mfdr_gaussian.c -o mfdr_gaussian.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ncvreg_init.c -o ncvreg_init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rawfit_gaussian.c -o rawfit_gaussian.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c standardize.c -o standardize.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o ncvreg.so cox-dh.o gaussian.o glm.o maxprod.o mfdr_binomial.o mfdr_cox.o mfdr_gaussian.o ncvreg_init.o rawfit_gaussian.o standardize.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfcMquH/R.INSTALL1fef5611c63414/ncvreg/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-ncvreg/00new/ncvreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ncvreg)
begin installing package ‘magrittr’
* installing *source* package ‘evaluate’ ...
** this is package ‘evaluate’ version ‘1.0.5’
** package ‘evaluate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (evaluate)
begin installing package ‘praise’
* installing *source* package ‘remotes’ ...
** this is package ‘remotes’ version ‘2.5.0’
** package ‘remotes’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (remotes)
begin installing package ‘ps’
* installing *source* package ‘digest’ ...
** this is package ‘digest’ version ‘0.6.39’
** package ‘digest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAS8wH7/R.INSTALL1fe18219d72ff9/digest/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c SpookyV2.cpp -o SpookyV2.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c aes.c -o aes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c blake3.c -o blake3.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c blake3_dispatch.c -o blake3_dispatch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c blake3_portable.c -o blake3_portable.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c crc32.c -o crc32.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c crc32c.cpp -o crc32c.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c crc32c_portable.cpp -o crc32c_portable.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c digest.c -o digest.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c digest2int.c -o digest2int.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c md5.c -o md5.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pmurhash.c -o pmurhash.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c raes.c -o raes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha1.c -o sha1.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha2.c -o sha2.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha256.c -o sha256.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c spooky_serialize.cpp -o spooky_serialize.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xxhash.c -o xxhash.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAS8wH7/R.INSTALL1fe18219d72ff9/digest/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-digest/00new/digest/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (digest)
begin installing package ‘R6’
* installing *source* package ‘S7’ ...
** this is package ‘S7’ version ‘0.2.1’
** package ‘S7’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1I1JtZ/R.INSTALL1fff57176e655b/S7/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c method-dispatch.c -o method-dispatch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c prop.c -o prop.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o S7.so init.o method-dispatch.o prop.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1I1JtZ/R.INSTALL1fff57176e655b/S7/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-S7/00new/S7/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (S7)
begin installing package ‘nnls’
* installing *source* package ‘praise’ ...
** this is package ‘praise’ version ‘1.0.0’
** package ‘praise’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (praise)
begin installing package ‘gbm’
* installing *source* package ‘magrittr’ ...
** this is package ‘magrittr’ version ‘2.0.4’
** package ‘magrittr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoiQEjG/R.INSTALL20086b50d0fe77/magrittr/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pipe.c -o pipe.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoiQEjG/R.INSTALL20086b50d0fe77/magrittr/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-magrittr/00new/magrittr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (magrittr)
* installing *source* package ‘brio’ ...
** this is package ‘brio’ version ‘1.1.5’
** package ‘brio’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgdtGI7/R.INSTALL2007f55fe7d233/brio/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c brio.c -o brio.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c file_line_endings.c -o file_line_endings.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c read_file.c -o read_file.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c read_file_raw.c -o read_file_raw.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c read_lines.c -o read_lines.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c write_file.c -o write_file.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c write_file_raw.c -o write_file_raw.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c write_lines.c -o write_lines.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_file_raw.o write_lines.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgdtGI7/R.INSTALL2007f55fe7d233/brio/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-brio/00new/brio/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brio)
begin installing package ‘kernlab’
begin installing package ‘LogicReg’
* installing *source* package ‘modeltools’ ...
** this is package ‘modeltools’ version ‘0.2-24’
** package ‘modeltools’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘na.pass’ from package ‘stats’ in package ‘modeltools’
Creating a generic function from function ‘MEapply’ in package ‘modeltools’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (modeltools)
begin installing package ‘mlbench’
* installing *source* package ‘timeDate’ ...
** this is package ‘timeDate’ version ‘4051.111’
** package ‘timeDate’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘sample’ from package ‘base’ in package ‘timeDate’
Creating a generic function for ‘getDataPart’ from package ‘methods’ in package ‘timeDate’
Creating a generic function for ‘abline’ from package ‘graphics’ in package ‘timeDate’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (timeDate)
begin installing package ‘nloptr’
* installing *source* package ‘R6’ ...
** this is package ‘R6’ version ‘2.6.1’
** package ‘R6’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (R6)
begin installing package ‘polspline’
* installing *source* package ‘nnls’ ...
** this is package ‘nnls’ version ‘1.6’
** package ‘nnls’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbttjYe/R.INSTALL20117f49fc864/nnls/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c lawson_hanson_nnls.f -o lawson_hanson_nnls.o
lawson_hanson_nnls.f:503:4:
503 | 440 continue
| 1
Warning: Label 440 at (1) defined but not used [-Wunused-label]
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c nnnpls.f -o nnnpls.o
nnnpls.f:368:4:
368 | 440 continue
| 1
Warning: Label 440 at (1) defined but not used [-Wunused-label]
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o nnls.so init.o lawson_hanson_nnls.o nnnpls.o -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbttjYe/R.INSTALL20117f49fc864/nnls/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-nnls/00new/nnls/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nnls)
begin installing package ‘quadprog’
* installing *source* package ‘pls’ ...
** this is package ‘pls’ version ‘2.8-5’
** package ‘pls’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pls)
begin installing package ‘randomForest’
* installing *source* package ‘jsonlite’ ...
** this is package ‘jsonlite’ version ‘2.0.0’
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxGz9ti/R.INSTALL20034c6418933d/jsonlite/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c base64.c -o base64.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c collapse_array.c -o collapse_array.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c collapse_object.c -o collapse_object.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c collapse_pretty.c -o collapse_pretty.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c escape_chars.c -o escape_chars.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c integer64_to_na.c -o integer64_to_na.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c is_datelist.c -o is_datelist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c is_recordlist.c -o is_recordlist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c is_scalarlist.c -o is_scalarlist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c modp_numtoa.c -o modp_numtoa.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c null_to_na.c -o null_to_na.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c num_to_char.c -o num_to_char.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c parse.c -o parse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c prettify.c -o prettify.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c push_parser.c -o push_parser.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c r-base64.c -o r-base64.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c register.c -o register.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c row_collapse.c -o row_collapse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c transpose_list.c -o transpose_list.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c validate.c -o validate.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl.c -o yajl/yajl.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl_buf.c -o yajl/yajl_buf.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl_encode.c -o yajl/yajl_encode.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl_gen.c -o yajl/yajl_gen.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl_lex.c -o yajl/yajl_lex.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl_parser.c -o yajl/yajl_parser.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c yajl/yajl_tree.c -o yajl/yajl_tree.o
ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxGz9ti/R.INSTALL20034c6418933d/jsonlite/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-jsonlite/00new/jsonlite/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs”
in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime”
in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms”
in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json”
in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64”
in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist”
in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob”
in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar”
in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf”
in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc”
in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jsonlite)
begin installing package ‘RhpcBLASctl’
* installing *source* package ‘xfun’ ...
** this is package ‘xfun’ version ‘0.54’
** package ‘xfun’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2D7zSh/R.INSTALL2000672bd433a7/xfun/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c base64.c -o base64.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rand_lcg.c -o rand_lcg.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o xfun.so base64.o init.o rand_lcg.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2D7zSh/R.INSTALL2000672bd433a7/xfun/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-xfun/00new/xfun/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xfun)
begin installing package ‘future’
* installing *source* package ‘rJava’ ...
** this is package ‘rJava’ version ‘1.0-11’
** package ‘rJava’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer accepts -g... yes
checking for gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver : '/usr/bin/jar'
compiler : '/usr/bin/javac'
header prep.: ''
cpp flags : '-I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux'
java libs : '-L/usr/lib/jvm/java-21-openjdk-amd64/lib/server -ljvm'
checking whether Java run-time works... yes
checking whether -Xrs is supported... yes
checking whether -Xrs will be used... yes
checking whether JVM will be loaded dynamically... no
checking whether JNI programs can be compiled... yes
checking whether JNI programs run... yes
checking JNI data types... ok
checking whether JRI should be compiled (autodetect)... yes
checking whether debugging output should be enabled... no
checking whether memory profiling is desired... no
checking whether threads support is requested... no
checking whether callbacks support is requested... no
checking whether JNI cache support is requested... no
checking whether headless init is enabled... no
checking whether JRI is requested... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/zzz.R
config.status: creating src/config.h
=== configuring in jri (/home/hornik/tmp/scratch/RtmpClQveL/R.INSTALL1fef4c14cdeb51/rJava/jri)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local' 'CC=gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer' 'CFLAGS=-g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation' 'LDFLAGS=-Wl,-O1' 'CPPFLAGS=-I/usr/local/include' --cache-file=/dev/null --srcdir=.
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for gcc... gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer accepts -g... yes
checking for gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking for sys/select.h... yes
checking Java version... 21.0.10-ea
checking Java compatibility version (integer)... 21
checking whether actually works... no
checking whether javah was replaced by javac -h... yes
checking for target flags... -h . -target 1.8 -source 1.8
checking whether Java interpreter works... checking whether JNI programs can be compiled... yes
checking whether JNI programs can be run... yes
checking JNI data types... ok
checking whether Rinterface.h exports R_CStackXXX variables... yes
checking whether Rinterface.h exports R_SignalHandlers... yes
configure: creating ./config.status
config.status: creating src/Makefile
config.status: creating Makefile
config.status: creating run
config.status: creating src/config.h
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpClQveL/R.INSTALL1fef4c14cdeb51/rJava/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Rglue.c -o Rglue.o
In file included from rJava.h:28,
from Rglue.c:2:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c arrayc.c -o arrayc.o
In file included from rJava.h:28,
from arrayc.c:7:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c callJNI.c -o callJNI.o
In file included from rJava.h:28,
from callJNI.c:3:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c callback.c -o callback.o
In file included from rJava.h:28,
from callback.c:1:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fields.c -o fields.o
In file included from rJava.h:28,
from fields.c:7:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
In file included from rJava.h:28,
from init.c:1:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
init.c: In function ‘initJVM’:
init.c:175:38: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
175 | vm_options[propNum++].extraInfo = vfprintf_hook;
| ^
init.c:179:38: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
179 | vm_options[propNum++].extraInfo = exit_hook;
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c jri_glue.c -o jri_glue.o
In file included from rJava.h:28,
from jri_glue.c:3:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c loader.c -o loader.o
In file included from rJava.h:28,
from loader.c:7:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c otables.c -o otables.o
In file included from rJava.h:28,
from otables.c:1:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rJava.c -o rJava.o
In file included from rJava.h:28,
from rJava.c:4:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c registration.c -o registration.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rjstring.c -o rjstring.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tools.c -o tools.o
In file included from rJava.h:28,
from tools.c:7:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Callbacks.h:37:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
37 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o registration.o rjstring.o tools.o -L/usr/lib/jvm/java-21-openjdk-amd64/lib/server -ljvm -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
(cd ../jri && make)
make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpClQveL/R.INSTALL1fef4c14cdeb51/rJava/jri'
make -C src JRI.jar
make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpClQveL/R.INSTALL1fef4c14cdeb51/rJava/jri/src'
/usr/bin/javac -h . -target 1.8 -source 1.8 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
warning: [options] bootstrap class path not set in conjunction with -source 8
warning: [options] source value 8 is obsolete and will be removed in a future release
warning: [options] target value 8 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
../REXP.java:170: warning: [removal] finalize() in Object has been deprecated and marked for removal
protected void finalize() throws Throwable {
^
../REXP.java:175: warning: [removal] finalize() in Object has been deprecated and marked for removal
super.finalize();
^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
6 warnings
if [ -n "" ]; then -d . -classpath . org.rosuda.JRI.Rengine; fi
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -fpic -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/home/hornik/tmp/R-d-gcc-xtra/include -I/home/hornik/tmp/R-d-gcc-xtra/include
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -fpic -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/home/hornik/tmp/R-d-gcc-xtra/include -I/home/hornik/tmp/R-d-gcc-xtra/include
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -fpic -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/home/hornik/tmp/R-d-gcc-xtra/include -I/home/hornik/tmp/R-d-gcc-xtra/include
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -fpic -I/home/hornik/tmp/R-d-gcc-xtra/include -I/home/hornik/tmp/R-d-gcc-xtra/include
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -fpic -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -fpic -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -c -o rjstring.o rjstring.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -fpic -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -I/home/hornik/tmp/R-d-gcc-xtra/include -I/home/hornik/tmp/R-d-gcc-xtra/include
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o rjstring.o -Wl,-O1 -shared -L/usr/lib/jvm/java-21-openjdk-amd64/lib/server -ljvm -fsanitize=address,undefined -Wl,--export-dynamic -Wl,-O1 -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n
/usr/bin/javac -h . -target 1.8 -source 1.8 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java
warning: [options] bootstrap class path not set in conjunction with -source 8
warning: [options] source value 8 is obsolete and will be removed in a future release
warning: [options] target value 8 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
../REXP.java:170: warning: [removal] finalize() in Object has been deprecated and marked for removal
protected void finalize() throws Throwable {
^
../REXP.java:175: warning: [removal] finalize() in Object has been deprecated and marked for removal
super.finalize();
^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
6 warnings
/usr/bin/jar fc JRI.jar org libjri.so
make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpClQveL/R.INSTALL1fef4c14cdeb51/rJava/jri/src'
rm -f libjri.so
cp src/libjri.so libjri.so
/usr/bin/javac -h . -target 1.8 -source 1.8 -classpath src/JRI.jar -d examples examples/rtest.java
warning: [options] bootstrap class path not set in conjunction with -source 8
warning: [options] source value 8 is obsolete and will be removed in a future release
warning: [options] target value 8 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
Note: examples/rtest.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
4 warnings
/usr/bin/javac -h . -target 1.8 -source 1.8 -classpath src/JRI.jar -d examples examples/rtest2.java
warning: [options] bootstrap class path not set in conjunction with -source 8
warning: [options] source value 8 is obsolete and will be removed in a future release
warning: [options] target value 8 is obsolete and will be removed in a future release
warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
Note: examples/rtest2.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
4 warnings
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpClQveL/R.INSTALL1fef4c14cdeb51/rJava/jri'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpClQveL/R.INSTALL1fef4c14cdeb51/rJava/src'
installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-rJava/00new/rJava
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rJava)
begin installing package ‘rngtools’
* installing *source* package ‘plotrix’ ...
** this is package ‘plotrix’ version ‘3.8-13’
** package ‘plotrix’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plotrix)
begin installing package ‘tzdb’
* installing *source* package ‘mlbench’ ...
** this is package ‘mlbench’ version ‘2.1-6’
** package ‘mlbench’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWc3LAN/R.INSTALL2012c75f9d490d/mlbench/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c waveform.c -o waveform.o
waveform.c: In function ‘execute’:
waveform.c:94:24: warning: ‘choice[0]’ may be used uninitialized [-Wmaybe-uninitialized]
94 | int waveform_type, choice[2];
| ^~~~~~
waveform.c:94:24: warning: ‘choice[1]’ may be used uninitialized [-Wmaybe-uninitialized]
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o mlbench.so init.o waveform.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWc3LAN/R.INSTALL2012c75f9d490d/mlbench/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-mlbench/00new/mlbench/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mlbench)
begin installing package ‘timechange’
* installing *source* package ‘zoo’ ...
** this is package ‘zoo’ version ‘1.8-14’
** package ‘zoo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdAnZNX/R.INSTALL2002f4666b083b/zoo/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c coredata.c -o coredata.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lag.c -o lag.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o zoo.so coredata.o init.o lag.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdAnZNX/R.INSTALL2002f4666b083b/zoo/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-zoo/00new/zoo/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (zoo)
begin installing package ‘askpass’
* installing *source* package ‘quadprog’ ...
** this is package ‘quadprog’ version ‘1.5-8’
** package ‘quadprog’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNGgqSL/R.INSTALL2016b55e967d5/quadprog/src'
gfortran-15 -fsanitize=address -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -msse2 -mfpmath=sse -fpic -g -O2 -Wall -pedantic -mtune=native -c aind.f -o aind.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gfortran-15 -fsanitize=address -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -msse2 -mfpmath=sse -fpic -g -O2 -Wall -pedantic -mtune=native -c solve.QP.compact.f -o solve.QP.compact.o
solve.QP.compact.f:254:3:
254 | 72 if (nvl .EQ. 0) then
| 1
Warning: Label 72 at (1) defined but not used [-Wunused-label]
solve.QP.compact.f:302:2:
302 | 7 t1inf = .FALSE.
| 1
Warning: Label 7 at (1) defined but not used [-Wunused-label]
solve.QP.compact.f:492:10:
492 | if (it1 .EQ. nact) goto 799
| ^
Warning: ‘it1’ may be used uninitialized [-Wmaybe-uninitialized]
solve.QP.compact.f:94:66:
94 | * info, q, fdamat, iamat(fdamat+1,*), iact(*), iter(*), it1,
| ^~~
note: ‘it1’ was declared here
gfortran-15 -fsanitize=address -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -msse2 -mfpmath=sse -fpic -g -O2 -Wall -pedantic -mtune=native -c solve.QP.f -o solve.QP.o
solve.QP.f:245:3:
245 | 72 if (nvl .EQ. 0) then
| 1
Warning: Label 72 at (1) defined but not used [-Wunused-label]
solve.QP.f:293:2:
293 | 7 t1inf = .FALSE.
| 1
Warning: Label 7 at (1) defined but not used [-Wunused-label]
solve.QP.f:483:10:
483 | if (it1 .EQ. nact) goto 799
| ^
Warning: ‘it1’ may be used uninitialized [-Wmaybe-uninitialized]
solve.QP.f:85:39:
85 | * info, q, iact(*), iter(*), it1,
| ^~~
note: ‘it1’ was declared here
gfortran-15 -fsanitize=address -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -msse2 -mfpmath=sse -fpic -g -O2 -Wall -pedantic -mtune=native -c util.f -o util.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o quadprog.so aind.o init.o solve.QP.compact.o solve.QP.o util.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNGgqSL/R.INSTALL2016b55e967d5/quadprog/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-quadprog/00new/quadprog/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (quadprog)
begin installing package ‘bit64’
* installing *source* package ‘RhpcBLASctl’ ...
** this is package ‘RhpcBLASctl’ version ‘0.23-42’
** package ‘RhpcBLASctl’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer accepts -g... yes
checking for gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer option to enable C11 features... none needed
checking for dlopen in -ldl... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/sysctl.h... no
checking for sysctl... no
checking for sysctlbyname... no
checking for sys/sysinfo.h... yes
checking for get_nprocs... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMNxm9P/R.INSTALL2019aa7f8ecfc7/RhpcBLASctl/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c blasctl.c -o blasctl.o
blasctl.c: In function ‘get_num_cores’:
blasctl.c:176:9: warning: variable ‘rcbuf’ set but not used [-Wunused-but-set-variable]
176 | char *rcbuf=NULL;
| ^~~~~
blasctl.c: In function ‘Rhpc_omp_set_num_threads’:
blasctl.c:366:7: warning: unused variable ‘n’ [-Wunused-variable]
366 | int n = INTEGER(num)[0];
| ^
In file included from blasctl.c:12:
blasctl.h: At top level:
blasctl.h:4:14: warning: ‘getRblasName’ defined but not used [-Wunused-function]
4 | static char *getRblasName(void)
| ^~~~~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o RhpcBLASctl.so blasctl.o registerDynamicSymbol.o -ldl -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMNxm9P/R.INSTALL2019aa7f8ecfc7/RhpcBLASctl/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-RhpcBLASctl/00new/RhpcBLASctl/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RhpcBLASctl)
* installing *source* package ‘mvtnorm’ ...
** this is package ‘mvtnorm’ version ‘1.3-3’
** package ‘mvtnorm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0U2xNz/R.INSTALL2001611ebe5738/mvtnorm/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lpmvnorm.c -o lpmvnorm.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ltMatrices.c -o ltMatrices.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c miwa.c -o miwa.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c mvt.f -o mvt.o
mvt.f:868:11:
868 | hs = sign( one, dh - r*dk )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
mvt.f:869:11:
869 | ks = sign( one, dk - r*dh )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
mvt.f:1164:16:
1164 | K = MOD( C(NP, MIN(NDIM-1,KLIM-1))*DBLE(K), DBLE(P(NP)) )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
mvt.f:1224:17:
1224 | JP = 1 + J*R(J)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c mvtnorm-init.c -o mvtnorm-init.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c tvpack.f -o tvpack.o
tvpack.f:395:14:
395 | HS = SIGN( ONE, DH - R*DK )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
tvpack.f:396:14:
396 | KS = SIGN( ONE, DK - R*DH )
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
tvpack.f:220:72:
220 | END
| ^
Warning: ‘fin’ may be used uninitialized [-Wmaybe-uninitialized]
tvpack.f:196:56:
196 | DOUBLE PRECISION EI(NL), AI(NL), BI(NL), FI(NL), FIN, ERR, KRNRDT
| ^~~
note: ‘fin’ was declared here
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o mvtnorm.so C_FORTRAN_interface.o lpmvnorm.o ltMatrices.o miwa.o mvt.o mvtnorm-init.o tvpack.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0U2xNz/R.INSTALL2001611ebe5738/mvtnorm/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-mvtnorm/00new/mvtnorm/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvtnorm)
begin installing package ‘progressr’
begin installing package ‘lambda.r’
* installing *source* package ‘nloptr’ ...
** this is package ‘nloptr’ version ‘2.2.1’
** package ‘nloptr’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 accepts -g... yes
checking for g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 accepts -g... (cached) yes
checking for g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 option to enable C++11 features... (cached) none needed
checking for pkg-config... /usr/bin/pkg-config
checking if pkg-config knows NLopt... yes
checking for pkg-config checking NLopt version... >= 2.7.0
Copying headers found in /usr/include into inst/include
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprRRxtp/R.INSTALL2014ee4f18f8ac/nloptr/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -flto=2 -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c dummy.cpp -o dummy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -flto=2 -Wno-stringop-truncation -c init_nloptr.c -o init_nloptr.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -flto=2 -Wno-stringop-truncation -c nloptr.c -o nloptr.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o nloptr.so dummy.o init_nloptr.o nloptr.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -lnlopt -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprRRxtp/R.INSTALL2014ee4f18f8ac/nloptr/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-nloptr/00new/nloptr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nloptr)
begin installing package ‘Rdpack’
* installing *source* package ‘rngtools’ ...
** this is package ‘rngtools’ version ‘1.5.2’
** package ‘rngtools’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rngtools)
begin installing package ‘itertools’
* installing *source* package ‘ps’ ...
** this is package ‘ps’ version ‘1.9.1’
** package ‘ps’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp95NjgE/R.INSTALL20093d19cd9f5f/ps/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -Wl,-O1 -Wall px.c -o px
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c api-common.c -o api-common.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c common.c -o common.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extra.c -o extra.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dummy.c -o dummy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c error-codes.c -o error-codes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cleancall.c -o cleancall.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c posix.c -o posix.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c api-posix.c -o api-posix.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c linux.c -o linux.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c api-linux.c -o api-linux.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o cleancall.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp95NjgE/R.INSTALL20093d19cd9f5f/ps/src'
installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-ps/00new/ps
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ps)
begin installing package ‘BiocGenerics’
* installing *source* package ‘askpass’ ...
** this is package ‘askpass’ version ‘1.2.1’
** package ‘askpass’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8H14D9/R.INSTALL201e4385ede43/askpass/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c askpass.c -o askpass.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o askpass.so askpass.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8H14D9/R.INSTALL201e4385ede43/askpass/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-askpass/00new/askpass/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (askpass)
begin installing package ‘diagram’
* installing *source* package ‘zip’ ...
** this is package ‘zip’ version ‘2.3.3’
** package ‘zip’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpB6iIsg/R.INSTALL1fdb4c5c4df9ab/zip/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c miniz.c -o miniz.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rzip.c -o rzip.o
rzip.c:19:9: warning: ‘S_IFLNK’ redefined
19 | #define S_IFLNK 0120000 /* [XSI] symbolic link */
| ^~~~~~~
In file included from rzip.c:5:
/usr/include/x86_64-linux-gnu/sys/stat.h:113:11: note: this is the location of the previous definition
113 | # define S_IFLNK __S_IFLNK
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c zip.c -o zip.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unixutils.c -o unixutils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpB6iIsg/R.INSTALL1fdb4c5c4df9ab/zip/src'
installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-zip/00new/zip
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (zip)
begin installing package ‘libcoin’
* installing *source* package ‘XML’ ...
** this is package ‘XML’ version ‘3.99-0.20’
** package ‘XML’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer accepts -g... yes
checking for gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer option to enable C11 features... none needed
checking how to run the C preprocessor... gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -E
checking for sed... /usr/bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... /usr/bin/xml2-config
USE_XML2 = yes
SED_EXTENDED_ARG: -E
Minor 15, Patch 1 for 2.15.1
Located parser file -I/usr/include/libxml2/parser.h
Checking for 1.8: -I/usr/include/libxml2
Using libxml2.*
checking for gzopen in -lz... yes
checking for xmlParseFile in -lxml2... yes
checking for xmlHashSize in -lxml2... yes
Using built-in xmlHashSize
Checking DTD parsing (presence of externalSubset)...
checking for xmlHashSize in -lxml2... (cached) yes
Found xmlHashSize
checking for xmlOutputBufferCreateBuffer in -lxml2... yes
have xmlOutputBufferCreateBuffer()
checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes
checking for libxml/xmlversion.h... yes
Expat: FALSE
Checking for return type of xmlHashScan element routine.
No return value for xmlHashScan
xmlNs has a context field
Checking for cetype_t enumeration
Using recent version of R with cetype_t enumeration type for encoding
checking for xmlsec1-config... no
nodegc default
xml-debug default
Version has XML_WITH_ZLIB
Version has xmlHasFeature()
****************************************
Configuration information:
Libxml settings
libxml include directory: -I/usr/include/libxml2
libxml library directory: -lxml2 -lz -lxml2
libxml 2: -DLIBXML2=1
Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1
Link flags: -lxml2 -lz -lxml2
****************************************
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/supports.R
config.status: creating inst/scripts/RSXML.csh
config.status: creating inst/scripts/RSXML.bsh
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpwhi5eC/R.INSTALL1fe2df3a0a2838/XML/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c DocParse.c -o DocParse.o
DocParse.c: In function ‘RS_XML_getDefaultValiditySetting’:
DocParse.c:67:2: warning: ‘__xmlDoValidityCheckingDefaultValue’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
67 | INTEGER_DATA(ans)[0] = xmlDoValidityCheckingDefaultValue;
| ^~~~~~~~~~~~
In file included from DocParse.h:18,
from DocParse.c:10:
/usr/include/libxml2/libxml/parser.h:1270:16: note: declared here
1270 | XMLPUBFUN int *__xmlDoValidityCheckingDefaultValue(void);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DocParse.c:70:6: warning: ‘__xmlDoValidityCheckingDefaultValue’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
70 | xmlDoValidityCheckingDefaultValue = INTEGER_DATA(val)[0];
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1270:16: note: declared here
1270 | XMLPUBFUN int *__xmlDoValidityCheckingDefaultValue(void);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c EventParse.c -o EventParse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ExpatParse.c -o ExpatParse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c HTMLParse.c -o HTMLParse.o
HTMLParse.c: In function ‘RS_XML_dumpHTMLDoc’:
HTMLParse.c:114:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
114 | oldIndent = xmlIndentTreeOutput;
| ^~~~~~~~~
In file included from DocParse.h:18,
from HTMLParse.c:9:
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
HTMLParse.c:118:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
118 | xmlIndentTreeOutput = LOGICAL(indent)[0];
| ^~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
HTMLParse.c:141:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
141 | xmlIndentTreeOutput = oldIndent;
| ^~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
HTMLParse.c:143:5: warning: ‘use’ is deprecated [-Wdeprecated-declarations]
143 | if(xbuf->use > 0) {
| ^~
In file included from /usr/include/libxml2/libxml/parser.h:20:
/usr/include/libxml2/libxml/tree.h:121:18: note: declared here
121 | unsigned int use XML_DEPRECATED_MEMBER;
| ^~~
HTMLParse.c:152:9: warning: ‘content’ is deprecated [-Wdeprecated-declarations]
152 | ans = ScalarString(ENC_COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(xbuf->content)));
| ^~~
/usr/include/libxml2/libxml/tree.h:115:14: note: declared here
115 | xmlChar *content XML_DEPRECATED_MEMBER;
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c NodeGC.c -o NodeGC.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RSDTD.c -o RSDTD.o
RSDTD.c: In function ‘RS_XML_getDTD’:
RSDTD.c:121:3: warning: ‘validate’ is deprecated [-Wdeprecated-declarations]
121 | ctxt->validate = 1;
| ^~~~
In file included from RSDTD.h:25,
from RSDTD.c:13:
/usr/include/libxml2/libxml/parser.h:374:9: note: declared here
374 | int validate XML_DEPRECATED_MEMBER;
| ^~~~~~~~
RSDTD.c:134:7: warning: ‘xmlSkipBlankChars’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
134 | SKIP_BLANKS;
| ^~~~~~~~~~~
In file included from RSDTD.h:26:
/usr/include/libxml2/libxml/parserInternals.h:513:33: note: declared here
513 | XMLPUBFUN int xmlSkipBlankChars (xmlParserCtxt *ctxt);
| ^~~~~~~~~~~~~~~~~
RSDTD.c:135:7: warning: ‘xmlParseMarkupDecl’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
135 | xmlParseMarkupDecl(ctxt);
| ^~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parserInternals.h:419:25: note: declared here
419 | xmlParseMarkupDecl (xmlParserCtxt *ctxt);
| ^~~~~~~~~~~~~~~~~~
RSDTD.c: In function ‘RS_XML_createDTDElementContents’:
RSDTD.c:555:3: warning: ‘type’ is deprecated [-Wdeprecated-declarations]
555 | INTEGER_DATA(VECTOR_ELT(ans, DTD_CONTENT_TYPE_SLOT))[0] = vals->type;
| ^~~~~~~~~~~~
In file included from /usr/include/libxml2/libxml/parser.h:20:
/usr/include/libxml2/libxml/tree.h:425:31: note: declared here
425 | xmlElementContentType type XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:556:3: warning: ‘type’ is deprecated [-Wdeprecated-declarations]
556 | SET_ENUM_NAME(ContentTypeNames, vals->type, VECTOR_ELT(ans, DTD_CONTENT_TYPE_SLOT));
| ^~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:425:31: note: declared here
425 | xmlElementContentType type XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:559:3: warning: ‘ocur’ is deprecated [-Wdeprecated-declarations]
559 | INTEGER_DATA(VECTOR_ELT(ans, DTD_CONTENT_OCCURANCE_SLOT))[0] = vals->ocur;
| ^~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:427:31: note: declared here
427 | xmlElementContentOccur ocur XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:560:3: warning: ‘ocur’ is deprecated [-Wdeprecated-declarations]
560 | SET_ENUM_NAME(OccuranceNames, vals->ocur, VECTOR_ELT(ans, DTD_CONTENT_OCCURANCE_SLOT));
| ^~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:427:31: note: declared here
427 | xmlElementContentOccur ocur XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:563:3: warning: ‘type’ is deprecated [-Wdeprecated-declarations]
563 | if(vals->type == XML_ELEMENT_CONTENT_SEQ && recursive) {
| ^~
/usr/include/libxml2/libxml/tree.h:425:31: note: declared here
425 | xmlElementContentType type XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:566:5: warning: ‘c1’ is deprecated [-Wdeprecated-declarations]
566 | num += (vals->c1 != NULL);
| ^~~
/usr/include/libxml2/libxml/tree.h:431:32: note: declared here
431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:568:7: warning: ‘c2’ is deprecated [-Wdeprecated-declarations]
568 | num += (vals->c2 != NULL);
| ^~~
/usr/include/libxml2/libxml/tree.h:433:32: note: declared here
433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:573:7: warning: ‘c1’ is deprecated [-Wdeprecated-declarations]
573 | if(vals->c1) {
| ^~
/usr/include/libxml2/libxml/tree.h:431:32: note: declared here
431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:574:9: warning: ‘c1’ is deprecated [-Wdeprecated-declarations]
574 | SET_VECTOR_ELT(VECTOR_ELT(ans, DTD_CONTENT_ELEMENTS_SLOT), num++, RS_XML(createDTDElementContents)(vals->c1, el, 1));
| ^~~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:431:32: note: declared here
431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:578:9: warning: ‘c2’ is deprecated [-Wdeprecated-declarations]
578 | if(vals->c2) {
| ^~
/usr/include/libxml2/libxml/tree.h:433:32: note: declared here
433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:579:10: warning: ‘c2’ is deprecated [-Wdeprecated-declarations]
579 | SET_VECTOR_ELT(VECTOR_ELT(ans, DTD_CONTENT_ELEMENTS_SLOT), num++, RS_XML(createDTDElementContents)(vals->c2, el, 1));
| ^~~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:433:32: note: declared here
433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:583:6: warning: ‘name’ is deprecated [-Wdeprecated-declarations]
583 | if(vals->name) {
| ^~
/usr/include/libxml2/libxml/tree.h:429:32: note: declared here
429 | const xmlChar *name XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:585:9: warning: ‘name’ is deprecated [-Wdeprecated-declarations]
585 | SET_STRING_ELT(VECTOR_ELT(ans, DTD_CONTENT_ELEMENTS_SLOT), 0, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(vals->name)));
| ^~~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:429:32: note: declared here
429 | const xmlChar *name XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:589:3: warning: ‘type’ is deprecated [-Wdeprecated-declarations]
589 | switch(vals->type) {
| ^~~~~~
/usr/include/libxml2/libxml/tree.h:425:31: note: declared here
425 | xmlElementContentType type XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c: In function ‘RS_XML_SequenceContent’:
RSDTD.c:620:3: warning: ‘c2’ is deprecated [-Wdeprecated-declarations]
620 | xmlElementContentPtr ptr = vals->c2;
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:433:32: note: declared here
433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:629:5: warning: ‘type’ is deprecated [-Wdeprecated-declarations]
629 | ok = (ptr->type == XML_ELEMENT_CONTENT_SEQ);
| ^~
/usr/include/libxml2/libxml/tree.h:425:31: note: declared here
425 | xmlElementContentType type XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:630:5: warning: ‘c2’ is deprecated [-Wdeprecated-declarations]
630 | ptr = ptr->c2;
| ^~~
/usr/include/libxml2/libxml/tree.h:433:32: note: declared here
433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:636:3: warning: ‘c1’ is deprecated [-Wdeprecated-declarations]
636 | SET_VECTOR_ELT(ans, 0, RS_XML(createDTDElementContents)(vals->c1, el, 1));
| ^~~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:431:32: note: declared here
431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:638:3: warning: ‘c2’ is deprecated [-Wdeprecated-declarations]
638 | ptr = vals->c2;
| ^~~
/usr/include/libxml2/libxml/tree.h:433:32: note: declared here
433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:642:5: warning: ‘c1’ is deprecated [-Wdeprecated-declarations]
642 | deep = (ptr->c1 != NULL && ptr->type == XML_ELEMENT_CONTENT_SEQ );
| ^~~~
/usr/include/libxml2/libxml/tree.h:431:32: note: declared here
431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:642:5: warning: ‘type’ is deprecated [-Wdeprecated-declarations]
642 | deep = (ptr->c1 != NULL && ptr->type == XML_ELEMENT_CONTENT_SEQ );
| ^~~~
/usr/include/libxml2/libxml/tree.h:425:31: note: declared here
425 | xmlElementContentType type XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:643:5: warning: ‘c1’ is deprecated [-Wdeprecated-declarations]
643 | tmp = RS_XML(createDTDElementContents)( deep ? ptr->c1 : ptr, el, deep);
| ^~~
/usr/include/libxml2/libxml/tree.h:431:32: note: declared here
431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c:645:5: warning: ‘type’ is deprecated [-Wdeprecated-declarations]
645 | ok = (ptr->type == XML_ELEMENT_CONTENT_SEQ);
| ^~
/usr/include/libxml2/libxml/tree.h:425:31: note: declared here
425 | xmlElementContentType type XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:646:5: warning: ‘c2’ is deprecated [-Wdeprecated-declarations]
646 | ptr = ptr->c2;
| ^~~
/usr/include/libxml2/libxml/tree.h:433:32: note: declared here
433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER;
| ^~
RSDTD.c: In function ‘RS_XML_createDTDAttribute’:
RSDTD.c:745:4: warning: ‘tree’ is deprecated [-Wdeprecated-declarations]
745 | SET_VECTOR_ELT(ans, DTD_ATTRIBUTE_DEFAULT_VALUE_SLOT, RS_XML(AttributeEnumerationList)(val->tree, val, el));
| ^~~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:386:29: note: declared here
386 | xmlEnumeration *tree XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c: In function ‘RS_XML_AttributeEnumerationList’:
RSDTD.c:777:5: warning: ‘next’ is deprecated [-Wdeprecated-declarations]
777 | tmp = tmp->next;
| ^~~
/usr/include/libxml2/libxml/tree.h:343:32: note: declared here
343 | struct _xmlEnumeration *next XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:786:7: warning: ‘name’ is deprecated [-Wdeprecated-declarations]
786 | SET_STRING_ELT(ans, i, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(tmp->name)));
| ^~~~~~~~~~~~~~
/usr/include/libxml2/libxml/tree.h:345:31: note: declared here
345 | const xmlChar *name XML_DEPRECATED_MEMBER;
| ^~~~
RSDTD.c:787:7: warning: ‘next’ is deprecated [-Wdeprecated-declarations]
787 | tmp = tmp->next;
| ^~~
/usr/include/libxml2/libxml/tree.h:343:32: note: declared here
343 | struct _xmlEnumeration *next XML_DEPRECATED_MEMBER;
| ^~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RUtils.c -o RUtils.o
RUtils.c: In function ‘RS_XML_SubstituteEntitiesDefault’:
RUtils.c:142:5: warning: ‘xmlSubstituteEntitiesDefault’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
142 | value = xmlSubstituteEntitiesDefault(LOGICAL_DATA(replaceEntities)[0]);
| ^~~~~
In file included from Utils.h:17,
from RUtils.c:1:
/usr/include/libxml2/libxml/parser.h:1415:17: note: declared here
1415 | xmlSubstituteEntitiesDefault(int val);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
RUtils.c: In function ‘RS_XML_getStructuredErrorHandler’:
RUtils.c:294:46: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic]
294 | SET_VECTOR_ELT(ans, 1, R_MakeExternalPtr((void *)xmlStructuredError, Rf_install("xmlStructuredErrorFunc"), R_NilValue));
| ^
RUtils.c: In function ‘RS_XML_setStructuredErrorHandler’:
RUtils.c:326:44: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
326 | handler = (sym == R_NilValue) ? NULL : (xmlStructuredErrorFunc) R_ExternalPtrAddr(sym);
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Rcatalog.c -o Rcatalog.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Utils.c -o Utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XMLEventParse.c -o XMLEventParse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XMLHashTree.c -o XMLHashTree.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XMLTree.c -o XMLTree.o
XMLTree.c: In function ‘R_saveXMLDOM’:
XMLTree.c:1147:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
1147 | int oldIndent = xmlIndentTreeOutput;
| ^~~
In file included from /usr/include/libxml2/libxml/parserInternals.h:18,
from XMLTree.c:33:
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
XMLTree.c:1159:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
1159 | xmlIndentTreeOutput = LOGICAL_DATA(sindent)[0];
| ^~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
XMLTree.c:1246:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
1246 | xmlIndentTreeOutput = oldIndent;
| ^~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
XMLTree.c: In function ‘RS_XML_printXMLNode’:
XMLTree.c:1421:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
1421 | oldIndent = xmlIndentTreeOutput;
| ^~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
XMLTree.c:1425:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
1425 | xmlIndentTreeOutput = LOGICAL(indent)[0];
| ^~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
XMLTree.c:1437:5: warning: ‘__xmlIndentTreeOutput’ is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations]
1437 | xmlIndentTreeOutput = oldIndent;
| ^~~~~~~~~~~~~~~~~~~
/usr/include/libxml2/libxml/parser.h:1286:16: note: declared here
1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void);
| ^~~~~~~~~~~~~~~~~~~~~
XMLTree.c:1439:5: warning: ‘use’ is deprecated [-Wdeprecated-declarations]
1439 | if(xbuf->use > 0) {
| ^~
In file included from /usr/include/libxml2/libxml/parser.h:20:
/usr/include/libxml2/libxml/tree.h:121:18: note: declared here
121 | unsigned int use XML_DEPRECATED_MEMBER;
| ^~~
XMLTree.c:1442:9: warning: ‘content’ is deprecated [-Wdeprecated-declarations]
1442 | ans = ScalarString(CreateCharSexpWithEncoding((const xmlChar *)encoding, (const xmlChar *)xbuf->content));
| ^~~
/usr/include/libxml2/libxml/tree.h:115:14: note: declared here
115 | xmlChar *content XML_DEPRECATED_MEMBER;
| ^~~~~~~
XMLTree.c:1444:9: warning: ‘content’ is deprecated [-Wdeprecated-declarations]
1444 | ans = ScalarString(mkCharCE((const char *)xbuf->content, INTEGER(r_encoding_int)[0]));
| ^~~
/usr/include/libxml2/libxml/tree.h:115:14: note: declared here
115 | xmlChar *content XML_DEPRECATED_MEMBER;
| ^~~~~~~
XMLTree.c: In function ‘R_xmlNsAsCharacter’:
XMLTree.c:1539:3: warning: ‘context’ is deprecated [-Wdeprecated-declarations]
1539 | encoding = ns->context ? ns->context->encoding : NULL;
| ^~~~~~~~
/usr/include/libxml2/libxml/tree.h:531:21: note: declared here
531 | struct _xmlDoc *context XML_DEPRECATED_MEMBER;
| ^~~~~~~
XMLTree.c:1539:3: warning: ‘context’ is deprecated [-Wdeprecated-declarations]
1539 | encoding = ns->context ? ns->context->encoding : NULL;
| ^~~~~~~~
/usr/include/libxml2/libxml/tree.h:531:21: note: declared here
531 | struct _xmlDoc *context XML_DEPRECATED_MEMBER;
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fixNS.c -o fixNS.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c libxmlFeatures.c -o libxmlFeatures.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c schema.c -o schema.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xmlsecurity.c -o xmlsecurity.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c xpath.c -o xpath.o
xpath.c: In function ‘R_addXMLInternalDocument_finalizer’:
xpath.c:182:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic]
182 | action = (R_CFinalizer_t) R_ExternalPtrAddr(fun);
| ^
xpath.c: In function ‘RS_XML_xpathEval’:
xpath.c:255:22: warning: ISO C forbids assignment between function pointer and ‘void *’ [-Wpedantic]
255 | routine = R_ExternalPtrAddr(el);
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lxml2 -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpwhi5eC/R.INSTALL1fe2df3a0a2838/XML/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-XML/00new/XML/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘source’ from package ‘base’ in package ‘XML’
in method for ‘xmlAttrsToDataFrame’ with signature ‘"AsIs"’: no definition for class “AsIs”
in method for ‘readKeyValueDB’ with signature ‘"AsIs"’: no definition for class “AsIs”
in method for ‘readSolrDoc’ with signature ‘"AsIs"’: no definition for class “AsIs”
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XML)
begin installing package ‘caTools’
* installing *source* package ‘commonmark’ ...
** this is package ‘commonmark’ version ‘2.0.0’
** package ‘commonmark’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0mI9nw/R.INSTALL1fe1ce7432c82e/commonmark/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions.c -o extensions.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c wrapper.c -o wrapper.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/cmark.c -o cmark/cmark.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/node.c -o cmark/node.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/iterator.c -o cmark/iterator.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/blocks.c -o cmark/blocks.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/inlines.c -o cmark/inlines.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/scanners.c -o cmark/scanners.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/utf8.c -o cmark/utf8.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/buffer.c -o cmark/buffer.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/references.c -o cmark/references.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/render.c -o cmark/render.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/man.c -o cmark/man.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/xml.c -o cmark/xml.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/html.c -o cmark/html.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/commonmark.c -o cmark/commonmark.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/latex.c -o cmark/latex.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/arena.c -o cmark/arena.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/linked_list.c -o cmark/linked_list.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/plugin.c -o cmark/plugin.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/registry.c -o cmark/registry.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/syntax_extension.c -o cmark/syntax_extension.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/plaintext.c -o cmark/plaintext.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/footnotes.c -o cmark/footnotes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cmark/map.c -o cmark/map.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions/autolink.c -o extensions/autolink.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions/core-extensions.c -o extensions/core-extensions.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions/ext_scanners.c -o extensions/ext_scanners.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions/strikethrough.c -o extensions/strikethrough.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions/table.c -o extensions/table.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions/tagfilter.c -o extensions/tagfilter.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extensions/tasklist.c -o extensions/tasklist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0mI9nw/R.INSTALL1fe1ce7432c82e/commonmark/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-commonmark/00new/commonmark/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (commonmark)
begin installing package ‘diffobj’
* installing *source* package ‘yaml’ ...
** this is package ‘yaml’ version ‘2.3.12’
** package ‘yaml’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6SWwbF/R.INSTALL20012a1809e7d4/yaml/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c api.c -o api.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dumper.c -o dumper.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c emitter.c -o emitter.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c implicit.c -o implicit.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c loader.c -o loader.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c parser.c -o parser.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c r_emit.c -o r_emit.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c r_ext.c -o r_ext.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c r_parse.c -o r_parse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c reader.c -o reader.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c scanner.c -o scanner.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c writer.c -o writer.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6SWwbF/R.INSTALL20012a1809e7d4/yaml/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-yaml/00new/yaml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yaml)
begin installing package ‘bartMachineJARs’
* installing *source* package ‘locfit’ ...
** this is package ‘locfit’ version ‘1.5-9.12’
** package ‘locfit’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8JsUfw/R.INSTALL1febfb74788f6f/locfit/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c S_enter.c -o S_enter.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from S_enter.c:14:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c band.c -o band.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from band.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dbinom.c -o dbinom.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dens_haz.c -o dens_haz.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from dens_haz.c:25:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dens_int.c -o dens_int.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from dens_int.c:21:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dens_odi.c -o dens_odi.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from dens_odi.c:19:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c density.c -o density.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from density.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ev_atree.c -o ev_atree.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from ev_atree.c:10:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ev_interp.c -o ev_interp.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from ev_interp.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ev_kdtre.c -o ev_kdtre.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from ev_kdtre.c:11:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ev_main.c -o ev_main.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from ev_main.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ev_sphere.c -o ev_sphere.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from ev_sphere.c:9:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ev_trian.c -o ev_trian.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from ev_trian.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c family.c -o family.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from family.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fitted.c -o fitted.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from fitted.c:15:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c frend.c -o frend.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from frend.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lf_adap.c -o lf_adap.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lf_adap.c:13:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lf_dercor.c -o lf_dercor.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lf_dercor.c:18:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lf_fitfun.c -o lf_fitfun.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lf_fitfun.c:23:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lf_nbhd.c -o lf_nbhd.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lf_nbhd.c:11:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lf_robust.c -o lf_robust.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lf_robust.c:26:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lf_vari.c -o lf_vari.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lf_vari.c:11:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lf_wdiag.c -o lf_wdiag.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lf_wdiag.c:12:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lfstr.c -o lfstr.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from lfstr.c:24:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c locfit.c -o locfit.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from local.h:12,
from locfit.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c m_chol.c -o m_chol.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c m_eigen.c -o m_eigen.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/R.h:70,
from m_eigen.c:6:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Boolean.h:65:16: warning: ISO C does not support specifying ‘enum’ underlying types before C23 [-Wpedantic]
65 | typedef enum :int { FALSE = 0, TRUE } Rboolean; // so NOT NA
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c m_icirc.c -o m_icirc.o
m_icirc.c: In function ‘integ_disc’:
m_icirc.c:115:14: warning: ‘nr’ may be used uninitialized [-Wmaybe-uninitialized]
115 | for (j=0; j1) num_threads(getDTthreads(nx, true))
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c negate.c -o negate.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nqrecreateindices.c -o nqrecreateindices.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c openmp-utils.c -o openmp-utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c programming.c -o programming.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c quickselect.c -o quickselect.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rbindlist.c -o rbindlist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c reorder.c -o reorder.o
reorder.c: In function ‘reorder’:
reorder.c:74: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
74 | #pragma omp parallel for num_threads(getDTthreads(end, true))
reorder.c:85: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
85 | #pragma omp parallel for num_threads(getDTthreads(end, true))
reorder.c:92: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
92 | #pragma omp parallel for num_threads(getDTthreads(end, true))
reorder.c:99: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
99 | #pragma omp parallel for num_threads(getDTthreads(end, true))
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c shift.c -o shift.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c snprintf.c -o snprintf.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c subset.c -o subset.o
subset.c: In function ‘subsetVectorRaw’:
subset.c:54: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
54 | PARLOOP(NA_INTEGER)
subset.c:54: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
subset.c:60: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
60 | PARLOOP(INT64_MIN)
subset.c:60: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
subset.c:64: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
64 | PARLOOP(NA_REAL)
subset.c:64: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
subset.c:93: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
93 | PARLOOP(NA_CPLX)
subset.c:93: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
subset.c:98: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
98 | PARLOOP(0)
subset.c:98: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
subset.c: In function ‘convertNegAndZeroIdx’:
subset.c:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for num_threads(getDTthreads(n, true))
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c transpose.c -o transpose.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c types.c -o types.o
types.c: In function ‘testMsgR’:
types.c:80: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
80 | #pragma omp parallel for schedule(dynamic) collapse(2) num_threads(getDTthreads(nx*nk, false))
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c uniqlist.c -o uniqlist.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vecseq.c -o vecseq.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c wrappers.c -o wrappers.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -lz -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
PKG_CFLAGS =
PKG_LIBS = -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQAGgBm/R.INSTALL1fec1f67863ddb/data.table/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
begin installing package ‘lava’
* installing *source* package ‘fontawesome’ ...
** this is package ‘fontawesome’ version ‘0.5.3’
** package ‘fontawesome’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fontawesome)
begin installing package ‘cvAUC’
* installing *source* package ‘jquerylib’ ...
** this is package ‘jquerylib’ version ‘0.1.4’
** package ‘jquerylib’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jquerylib)
begin installing package ‘ModelMetrics’
* installing *source* package ‘minqa’ ...
** this is package ‘minqa’ version ‘1.2.8’
** package ‘minqa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIOvwMg/R.INSTALL2039c63878ed10/minqa/src'
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c altmov.f -o altmov.o
altmov.f:170:12:
170 | KSAV=K
| ^~~~
Warning: ‘ksav’ may be used uninitialized [-Wmaybe-uninitialized]
altmov.f:180:72:
180 | TEMP=XOPT(I)+STPSAV*(XPT(KSAV,I)-XOPT(I))
| ^
Warning: ‘stpsav’ may be used uninitialized [-Wmaybe-uninitialized]
altmov.f:171:12:
171 | STPSAV=STEP
| ^~~~~~
note: ‘stpsav’ was declared here
altmov.f:238:72:
238 | W(I)=-STEP*GLAG(I)
| ^
Warning: ‘step’ may be used uninitialized [-Wmaybe-uninitialized]
altmov.f:121:13:
121 | STEP=SLBD
| ^~~~
note: ‘step’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c bigden.f -o bigden.o
bigden.f:51:3:
51 | 20 W(N+K)=W(N+K)+TEMP*ZMAT(K,J)
| 1
Warning: Label 20 at (1) defined but not used [-Wunused-label]
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c biglag.f -o biglag.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c bobyqa.f -o bobyqa.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c bobyqb.f -o bobyqb.o
bobyqb.f:139:72:
139 | ERRBIG=DMAX1(DIFFA,DIFFB,DIFFC)
| ^
Warning: ‘diffc’ may be used uninitialized [-Wmaybe-uninitialized]
bobyqb.f:139:40:
139 | ERRBIG=DMAX1(DIFFA,DIFFB,DIFFC)
| ^
note: ‘diffc’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c lagmax.f -o lagmax.o
lagmax.f:40:13:
40 | K=I
| ^
Warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized]
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c minqa.cpp -o minqa.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c newuoa.f -o newuoa.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c newuob.f -o newuob.o
newuob.f:146:14:
146 | IF (XJPT .LT. ZERO) JPT=JPT+N
| ^
Warning: ‘xjpt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:93:11:
93 | XJPT=RHOBEG
| ^~~~
note: ‘xjpt’ was declared here
newuob.f:145:14:
145 | IF (XIPT .LT. ZERO) IPT=IPT+N
| ^
Warning: ‘xipt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:91:11:
91 | XIPT=RHOBEG
| ^~~~
note: ‘xipt’ was declared here
newuob.f:390:10:
390 | IF (DNORM .GT. RHO) NFSAV=NF
| ^
Warning: ‘dnorm’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:180:7:
180 | DNORM=DMIN1(DELTA,DSQRT(DSQ))
| ^~~~~
note: ‘dnorm’ was declared here
newuob.f:144:72:
144 | IH=(IPT*(IPT-1))/2+JPT
| ^
Warning: ‘ipt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:85:11:
85 | IPT=JPT+ITEMP
| ^~~
note: ‘ipt’ was declared here
newuob.f:514:72:
514 | ITEST=ITEST+1
| ^
Warning: ‘itest’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:162:7:
162 | ITEST=0
| ^~~~~
note: ‘itest’ was declared here
newuob.f:144:72:
144 | IH=(IPT*(IPT-1))/2+JPT
| ^
Warning: ‘jpt’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:84:11:
84 | JPT=NFM-ITEMP*N-N
| ^~~
note: ‘jpt’ was declared here
newuob.f:495:13:
495 | IF (DABS(RATIO) .GT. 1.0D-2) THEN
| ^
Warning: ‘ratio’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:184:11:
184 | RATIO=-1.0D0
| ^~~~~
note: ‘ratio’ was declared here
newuob.f:151:72:
151 | HQ(IH)=(FBEG-FVAL(IPT+1)-FVAL(JPT+1)+F)/(XIPT*XJPT)
| ^
Warning: ‘fbeg’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:109:10:
109 | FBEG=F
| ^~~~
note: ‘fbeg’ was declared here
newuob.f:188:14:
188 | IF (TEMP .LE. DMAX1(DIFFA,DIFFB,DIFFC)) GOTO 460
| ^
Warning: ‘diffa’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:160:7:
160 | DIFFA=ZERO
| ^~~~~
note: ‘diffa’ was declared here
newuob.f:188:14:
188 | IF (TEMP .LE. DMAX1(DIFFA,DIFFB,DIFFC)) GOTO 460
| ^
Warning: ‘diffc’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:188:47:
188 | IF (TEMP .LE. DMAX1(DIFFA,DIFFB,DIFFC)) GOTO 460
| ^
note: ‘diffc’ was declared here
newuob.f:186:14:
186 | IF (NF .LE. NFSAV+2) GOTO 460
| ^
Warning: ‘nfsav’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:168:7:
168 | 90 NFSAV=NF
| ^~~~~
note: ‘nfsav’ was declared here
newuob.f:195:10:
195 | 120 IF (DSQ .LE. 1.0D-3*XOPTSQ) THEN
| ^
Warning: ‘xoptsq’ may be used uninitialized [-Wmaybe-uninitialized]
newuob.f:163:7:
163 | XOPTSQ=ZERO
| ^~~~~~
note: ‘xoptsq’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c prelim.f -o prelim.o
prelim.f:127:72:
127 | TEMP=(F-FBEG)/STEPB
| ^
Warning: ‘fbeg’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:105:11:
105 | FBEG=F
| ^~~~
note: ‘fbeg’ was declared here
prelim.f:157:72:
157 | TEMP=XPT(NF,IPT)*XPT(NF,JPT)
| ^
Warning: ‘ipt’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:78:11:
78 | IPT=JPT+ITEMP
| ^~~
note: ‘ipt’ was declared here
prelim.f:157:72:
157 | TEMP=XPT(NF,IPT)*XPT(NF,JPT)
| ^
Warning: ‘jpt’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:77:11:
77 | JPT=NFM-ITEMP*N-N
| ^~~
note: ‘jpt’ was declared here
prelim.f:131:18:
131 | IF (STEPA*STEPB .LT. ZERO) THEN
| ^
Warning: ‘stepa’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:65:15:
65 | STEPA=RHOBEG
| ^~~~~
note: ‘stepa’ was declared here
prelim.f:131:18:
131 | IF (STEPA*STEPB .LT. ZERO) THEN
| ^
Warning: ‘stepb’ may be used uninitialized [-Wmaybe-uninitialized]
prelim.f:70:15:
70 | STEPB=-RHOBEG
| ^~~~~
note: ‘stepb’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c rescue.f -o rescue.o
rescue.f:144:15:
144 | IW=(DBLE(K-NP)-HALF)/DBLE(N)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:224:15:
224 | IP=PTSID(K)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:226:15:
226 | IQ=DBLE(NP)*PTSID(K)-DBLE(IP*NP)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:328:12:
328 | IP=PTSID(KPT)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:329:12:
329 | IQ=DBLE(NP)*PTSID(KPT)-DBLE(IP*NP)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:398:15:
398 | IP=PTSID(K)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:399:15:
399 | IQ=DBLE(NP)*PTSID(K)-DBLE(IP*NP)
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
rescue.f:351:72:
351 | IW=MAX0(IHP,IHQ)-IABS(IP-IQ)
| ^
Warning: ‘ihp’ may be used uninitialized [-Wmaybe-uninitialized]
rescue.f:344:13:
344 | IHP=(IP+IP*IP)/2
| ^~~
note: ‘ihp’ was declared here
rescue.f:352:72:
352 | VQUAD=VQUAD+XP*XQ*HQ(IW)
| ^
Warning: ‘xp’ may be used uninitialized [-Wmaybe-uninitialized]
rescue.f:331:13:
331 | XP=PTSAUX(1,IP)
| ^~
note: ‘xp’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c trsapp.f -o trsapp.o
trsapp.f:73:72:
73 | ALPHA=DMIN1(ALPHA,GG/DHD)
| ^
Warning: ‘bstep’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:59:7:
59 | BSTEP=TEMP/(DS+DSQRT(DS*DS+DD*TEMP))
| ^~~~~
note: ‘bstep’ was declared here
trsapp.f:70:72:
70 | TEMP=DHD/DD
| ^
Warning: ‘dd’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:40:7:
40 | DD=ZERO
| ^~
note: ‘dd’ was declared here
trsapp.f:73:72:
73 | ALPHA=DMIN1(ALPHA,GG/DHD)
| ^
Warning: ‘gg’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:52:7:
52 | GG=DD
| ^~
note: ‘gg’ was declared here
trsapp.f:112:10:
112 | 90 IF (GG .LE. 1.0D-4*GGBEG) GOTO 160
| ^
Warning: ‘ggbeg’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:53:7:
53 | GGBEG=GG
| ^~~~~
note: ‘ggbeg’ was declared here
trsapp.f:76:72:
76 | QRED=QRED+QADD
| ^
Warning: ‘qred’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:39:7:
39 | 20 QRED=ZERO
| ^~~~
note: ‘qred’ was declared here
trsapp.f:145:72:
145 | CF=HALF*(SHS-DHD)
| ^
Warning: ‘shs’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:114:7:
114 | SHS=ZERO
| ^~~
note: ‘shs’ was declared here
trsapp.f:146:72:
146 | QBEG=SG+CF
| ^
Warning: ‘sg’ may be used uninitialized [-Wmaybe-uninitialized]
trsapp.f:113:7:
113 | SG=ZERO
| ^~
note: ‘sg’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c trsbox.f -o trsbox.o
trsbox.f:294:9:
294 | IU=17.0D0*ANGBD+3.1D0
| 1
Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
trsbox.f:294:72:
294 | IU=17.0D0*ANGBD+3.1D0
| ^
Warning: ‘angbd’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:235:7:
235 | ANGBD=ONE
| ^~~~~
note: ‘angbd’ was declared here
trsbox.f:299:72:
299 | REDNEW=STH*(ANGT*DREDG-SREDG-HALF*STH*TEMP)
| ^
Warning: ‘dredg’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:199:7:
199 | DREDG=ZERO
| ^~~~~
note: ‘dredg’ was declared here
trsbox.f:218:72:
218 | TEMP=GREDSQ*DREDSQ-DREDG*DREDG
| ^
Warning: ‘dredsq’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:198:7:
198 | DREDSQ=ZERO
| ^~~~~~
note: ‘dredsq’ was declared here
trsbox.f:340:27:
340 | IF (IACT .GT. 0 .AND. ISAV .EQ. IU) THEN
| ^
Warning: ‘iact’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:134:7:
134 | IACT=0
| ^~~~
note: ‘iact’ was declared here
trsbox.f:387:10:
387 | IF (ITERC .GT. ITCSAV) GOTO 150
| ^
Warning: ‘itcsav’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:211:7:
211 | ITCSAV=ITERC
| ^~~~~~
note: ‘itcsav’ was declared here
trsbox.f:299:72:
299 | REDNEW=STH*(ANGT*DREDG-SREDG-HALF*STH*TEMP)
| ^
Warning: ‘sredg’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:228:7:
228 | SREDG=-TEMP
| ^~~~~
note: ‘sredg’ was declared here
trsbox.f:342:72:
342 | XBDI(IACT)=XSAV
| ^
Warning: ‘xsav’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:258:19:
258 | XSAV=ONEMIN
| ^~~~
note: ‘xsav’ was declared here
trsbox.f:188:72:
188 | BETA=GREDSQ/GGSAV
| ^
Warning: ‘ggsav’ may be used uninitialized [-Wmaybe-uninitialized]
trsbox.f:160:11:
160 | GGSAV=GREDSQ
| ^~~~~
note: ‘ggsav’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c trstep.f -o trstep.o
trstep.f:275:18:
275 | IF (PHI .LE. PHIL) GOTO 370
| ^
Warning: ‘phil’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:275:31:
275 | IF (PHI .LE. PHIL) GOTO 370
| ^
note: ‘phil’ was declared here
trstep.f:330:14:
330 | IF (PHI .GE. PHIU) GOTO 370
| ^
Warning: ‘phiu’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:280:41:
280 | IF (PARU .GT. ZERO) SLOPE=(PHIU-PHI)/(PARU-PAR)
| ^
note: ‘phiu’ was declared here
trstep.f:372:18:
372 | IF (PIVKSV .EQ. ZERO) GOTO 360
| ^
Warning: ‘pivksv’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:372:24:
372 | IF (PIVKSV .EQ. ZERO) GOTO 360
| ^
note: ‘pivksv’ was declared here
trstep.f:216:72:
216 | SCALE=-DSIGN(DELTA/DSQRT(DSQ),DTG)
| ^
Warning: ‘dsq’ may be used uninitialized [-Wmaybe-uninitialized]
trstep.f:179:11:
179 | DSQ=ONE
| ^~~
note: ‘dsq’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c uobyqa.f -o uobyqa.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c uobyqb.f -o uobyqb.o
uobyqb.f:299:72:
299 | DELTA=DMAX1(DELTA,1.25D0*DNORM,DNORM+RHO)
| ^
Warning: ‘dnorm’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:196:7:
196 | DNORM=DMIN1(DELTA,DSQRT(TEMP))
| ^~~~~
note: ‘dnorm’ was declared here
uobyqb.f:118:18:
118 | IF (F .LT. FBASE) THEN
| ^
Warning: ‘fbase’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:71:10:
71 | FBASE=F
| ^~~~~
note: ‘fbase’ was declared here
uobyqb.f:98:72:
98 | D(J)=(FBASE+F-TWO*FSAVE)/RHOSQ
| ^
Warning: ‘fsave’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:91:33:
91 | D(J)=(FSAVE+F-TWO*FBASE)/RHOSQ
| ^
note: ‘fsave’ was declared here
uobyqb.f:134:72:
134 | IH=IH+1
| ^
Warning: ‘ih’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:74:10:
74 | IH=N
| ^~
note: ‘ih’ was declared here
uobyqb.f:151:72:
151 | IP=IP+1
| ^
Warning: ‘ip’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:131:11:
131 | IP=1
| ^~
note: ‘ip’ was declared here
uobyqb.f:143:72:
143 | IW=IQ+IQ
| ^
Warning: ‘iq’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:132:11:
132 | IQ=2
| ^~
note: ‘iq’ was declared here
uobyqb.f:86:72:
86 | JSWITCH=-JSWITCH
| ^
Warning: ‘jswitch’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:73:10:
73 | JSWITCH=-1
| ^~~~~~~
note: ‘jswitch’ was declared here
uobyqb.f:229:10:
229 | IF (KNEW .EQ. -1) GOTO 420
| ^
Warning: ‘knew’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:173:7:
173 | 70 KNEW=0
| ^~~~
note: ‘knew’ was declared here
uobyqb.f:253:72:
253 | VLAG(KOPT)=VLAG(KOPT)+ONE
| ^
Warning: ‘kopt’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:70:10:
70 | KOPT=NF
| ^~~~
note: ‘kopt’ was declared here
uobyqb.f:268:72:
268 | SIXTHM=DMAX1(SIXTHM,DABS(DIFF)/SUM)
| ^
Warning: ‘sixthm’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:166:7:
166 | SIXTHM=ZERO
| ^~~~~~
note: ‘sixthm’ was declared here
uobyqb.f:356:10:
356 | IF (DDKNEW .GT. TWORSQ) GOTO 70
| ^
Warning: ‘tworsq’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:168:7:
168 | 60 TWORSQ=(TWO*RHO)**2
| ^~~~~~
note: ‘tworsq’ was declared here
uobyqb.f:356:10:
356 | IF (DDKNEW .GT. TWORSQ) GOTO 70
| ^
Warning: ‘ddknew’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:320:13:
320 | DDKNEW=SUM
| ^~~~~~
note: ‘ddknew’ was declared here
uobyqb.f:402:14:
402 | IF (ERRTOL .GT. ZERO) THEN
| ^
Warning: ‘errtol’ may be used uninitialized [-Wmaybe-uninitialized]
uobyqb.f:197:7:
197 | ERRTOL=-ONE
| ^~~~~~
note: ‘errtol’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c update.f -o update.o
update.f:44:72:
44 | IF (JL .GT. 1) W(I)=W(I)+TEMPB*ZMAT(I,JL)
| ^
Warning: ‘tempb’ may be used uninitialized [-Wmaybe-uninitialized]
update.f:26:13:
26 | TEMPB=ZMAT(KNEW,J)/TEMP
| ^~~~~
note: ‘tempb’ was declared here
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c updatebobyqa.f -o updatebobyqa.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o minqa.so altmov.o bigden.o biglag.o bobyqa.o bobyqb.o lagmax.o minqa.o newuoa.o newuob.o prelim.o rescue.o trsapp.o trsbox.o trstep.o uobyqa.o uobyqb.o update.o updatebobyqa.o -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIOvwMg/R.INSTALL2039c63878ed10/minqa/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-minqa/00new/minqa/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (minqa)
begin installing package ‘xgboost’
* installing *source* package ‘Biobase’ ...
** this is package ‘Biobase’ version ‘2.70.0’
** package ‘Biobase’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprxrS7o/R.INSTALL2031c027ac5ec7/Biobase/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Rinit.c -o Rinit.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c envir.c -o envir.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c matchpt.c -o matchpt.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rowMedians.c -o rowMedians.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sublist_extract.c -o sublist_extract.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o Biobase.so Rinit.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprxrS7o/R.INSTALL2031c027ac5ec7/Biobase/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-Biobase/00new/Biobase/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Biobase)
* installing *source* package ‘waldo’ ...
** this is package ‘waldo’ version ‘0.6.2’
** package ‘waldo’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (waldo)
* installing *source* package ‘cvAUC’ ...
** this is package ‘cvAUC’ version ‘1.1.4’
** package ‘cvAUC’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cvAUC)
* installing *source* package ‘isoband’ ...
** this is package ‘isoband’ version ‘0.3.0’
** package ‘isoband’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpISWmnN/R.INSTALL203005648b5ac1/isoband/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c clip-lines.cpp -o clip-lines.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cpp11.cpp -o cpp11.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c isoband.cpp -o isoband.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c polygon.cpp -o polygon.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c separate-polygons.cpp -o separate-polygons.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-clip-lines.cpp -o test-clip-lines.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-runner.cpp -o test-runner.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-separate-polygons.cpp -o test-separate-polygons.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o isoband.so clip-lines.o cpp11.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpISWmnN/R.INSTALL203005648b5ac1/isoband/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-isoband/00new/isoband/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (isoband)
* installing *source* package ‘pkgbuild’ ...
** this is package ‘pkgbuild’ version ‘1.4.8’
** package ‘pkgbuild’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgbuild)
begin installing package ‘pkgload’
begin installing package ‘rcmdcheck’
* installing *source* package ‘gert’ ...
** this is package ‘gert’ version ‘2.2.0’
** package ‘gert’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-lgit2
Configuration OK!
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTm8Bjw/R.INSTALL2043c86fd51bb/gert/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c branch.c -o branch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c clone.c -o clone.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c commit.c -o commit.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c config.c -o config.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c conflicts.c -o conflicts.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c files.c -o files.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ignore.c -o ignore.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c merge.c -o merge.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rebase.c -o rebase.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c stash.c -o stash.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c submodules.c -o submodules.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tag.c -o tag.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c version.c -o version.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o ignore.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTm8Bjw/R.INSTALL2043c86fd51bb/gert/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-gert/00new/gert/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gert)
* installing *source* package ‘plyr’ ...
** this is package ‘plyr’ version ‘1.8.9’
** package ‘plyr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSSdDkK/R.INSTALL203af93f62d03d/plyr/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c loop_apply.c -o loop_apply.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c split-numeric.cpp -o split-numeric.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSSdDkK/R.INSTALL203af93f62d03d/plyr/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-plyr/00new/plyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plyr)
* installing *source* package ‘limma’ ...
** this is package ‘limma’ version ‘3.66.0’
** package ‘limma’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjdZHjT/R.INSTALL20260a409641c4/limma/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c normexp.c -o normexp.o
normexp.c: In function ‘fit_saddle_nelder_mead’:
normexp.c:166:78: warning: ISO C forbids passing argument 9 of ‘nmmin’ between function pointer and ‘void *’ [-Wpedantic]
166 | nmmin(3, par, parsOut, Fmin, normexp_m2loglik_saddle, fail, abstol, intol, &ex, alpha, beta, gamma, trace, fncount, maxit);
| ^~~
In file included from normexp.c:13:
/home/hornik/tmp/R-d-gcc-xtra/include/R_ext/Applic.h:72:58: note: expected ‘void *’ but argument is of type ‘void (*)(void)’
72 | int *fail, double abstol, double intol, void *ex,
| ~~~~~~^~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c weighted_lowess.c -o weighted_lowess.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o limma.so init.o normexp.o weighted_lowess.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjdZHjT/R.INSTALL20260a409641c4/limma/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-limma/00new/limma/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (limma)
begin installing package ‘edgeR’
* installing *source* package ‘rcmdcheck’ ...
** this is package ‘rcmdcheck’ version ‘1.4.0’
** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rcmdcheck)
* installing *source* package ‘pkgload’ ...
** this is package ‘pkgload’ version ‘1.4.1’
** package ‘pkgload’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgload)
begin installing package ‘testthat’
* installing *source* package ‘later’ ...
** this is package ‘later’ version ‘1.4.4’
** package ‘later’ successfully unpacked and MD5 sums checked
** using staged installation
Running configure script
-latomic linker flag not needed.
Found UBSAN. Will skip tests that raise false positives.
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFwplQo/R.INSTALL203980101dd94f/later/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include/RcppCommon.h:30,
from /home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include/Rcpp.h:27,
from RcppExports.cpp:5:
/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’
35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410"
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c callback_registry.cpp -o callback_registry.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c debug.cpp -o debug.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fd.cpp -o fd.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c later.cpp -o later.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c later_posix.cpp -o later_posix.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c later_win32.cpp -o later_win32.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c timer_posix.cpp -o timer_posix.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c timestamp_unix.cpp -o timestamp_unix.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c timestamp_win32.cpp -o timestamp_win32.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tinycthread.c -o tinycthread.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c wref.c -o wref.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o fd.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o wref.o -pthread -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFwplQo/R.INSTALL203980101dd94f/later/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-later/00new/later/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (later)
begin installing package ‘promises’
* installing *source* package ‘pROC’ ...
** this is package ‘pROC’ version ‘1.19.0.1’
** package ‘pROC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBWhKJO/R.INSTALL203c9123ab2543/pROC/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppVersion.cpp -o RcppVersion.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c delong.cpp -o delong.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o pROC.so RcppExports.o RcppVersion.o delong.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBWhKJO/R.INSTALL203c9123ab2543/pROC/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-pROC/00new/pROC/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pROC)
* installing *source* package ‘BiocParallel’ ...
** this is package ‘BiocParallel’ version ‘1.44.0’
** package ‘BiocParallel’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 accepts -g... yes
checking for g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 option to enable C++11 features... none needed
checking for library containing shm_open... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sys/mman.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0Oa0zq/R.INSTALL20358d2466be53/BiocParallel/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I"./" -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cpp11.cpp -o cpp11.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I"./" -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ipcmutex.cpp -o ipcmutex.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o BiocParallel.so cpp11.o ipcmutex.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0Oa0zq/R.INSTALL20358d2466be53/BiocParallel/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-BiocParallel/00new/BiocParallel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocParallel)
* installing *source* package ‘farver’ ...
** this is package ‘farver’ version ‘2.1.2’
** package ‘farver’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIxham8/R.INSTALL1fe65d7f81a21e/farver/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ColorSpace.cpp -o ColorSpace.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Comparison.cpp -o Comparison.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Conversion.cpp -o Conversion.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c encode.cpp -o encode.o
encode.cpp: In function ‘int double2int(double)’:
encode.cpp:22:33: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
22 | return reinterpret_cast(d);
| ^
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c farver.cpp -o farver.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c init.cpp -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIxham8/R.INSTALL1fe65d7f81a21e/farver/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-farver/00new/farver/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (farver)
begin installing package ‘scales’
* installing *source* package ‘lubridate’ ...
** this is package ‘lubridate’ version ‘1.9.4’
** package ‘lubridate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqkQyli/R.INSTALL2043eb14d20189/lubridate/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c datetime.c -o datetime.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c period.c -o period.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c tparse.c -o tparse.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o lubridate.so datetime.o init.o period.o tparse.o utils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqkQyli/R.INSTALL2043eb14d20189/lubridate/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-lubridate/00new/lubridate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lubridate)
* installing *source* package ‘earth’ ...
** this is package ‘earth’ version ‘5.3.4’
** package ‘earth’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzKqnWK/R.INSTALL2043382af4746e/earth/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c allowed.c -o allowed.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c earth.c -o earth.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c leaps.f -o leaps.o
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c leapshdr.f -o leapshdr.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rentries.c -o rentries.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o earth.so allowed.o earth.o leaps.o leapshdr.o rentries.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzKqnWK/R.INSTALL2043382af4746e/earth/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-earth/00new/earth/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (earth)
* installing *source* package ‘RcppArmadillo’ ...
** this is package ‘RcppArmadillo’ version ‘15.2.2-1’
** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 accepts -g... yes
checking for g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 accepts -g... (cached) yes
checking for g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 option to enable C++11 features... (cached) none needed
checking what system we are on... running Linux on x86_64
checking whether we have a suitable tempdir... /home/hornik/tmp/scratch
checking whether on Linux... yes
checking whether R CMD SHLIB can already compile OpenMP programs... yes
checking whether on macOS... no
checking for OpenMP... found and suitable
configure: creating ./config.status
config.status: creating inst/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf0qbWM/R.INSTALL2039d334057ef9/RcppArmadillo/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppArmadillo.cpp -o RcppArmadillo.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fastLm.cpp -o fastLm.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf0qbWM/R.INSTALL2039d334057ef9/RcppArmadillo/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppArmadillo)
begin installing package ‘KernelKnn’
* installing *source* package ‘polspline’ ...
** this is package ‘polspline’ version ‘1.1.25’
** package ‘polspline’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpM5KPoV/R.INSTALL20156e25d84cb/polspline/src'
gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c allpack.f -o allpack.o
allpack.f:680:5:
680 | 100 CONTINUE
| 1
Warning: Label 100 at (1) defined but not used [-Wunused-label]
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c hareall.c -o hareall.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c heftall.c -o heftall.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lsdall.c -o lsdall.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c lspecall.c -o lspecall.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c nlsd.c -o nlsd.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c polyall.c -o polyall.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c polymars.c -o polymars.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o polspline.so allpack.o hareall.o heftall.o lsdall.o lspecall.o nlsd.o polyall.o polymars.o registerDynamicSymbol.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpM5KPoV/R.INSTALL20156e25d84cb/polspline/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-polspline/00new/polspline/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (polspline)
* installing *source* package ‘coin’ ...
** this is package ‘coin’ version ‘1.4-3’
** package ‘coin’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyK6x1p/R.INSTALL20435b22a62c83/coin/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/libcoin/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Helpers.c -o Helpers.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/libcoin/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c StreitbergRoehmel.c -o StreitbergRoehmel.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/libcoin/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c coin-init.c -o coin-init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/libcoin/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vandeWiel.c -o vandeWiel.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o coin.so Helpers.o StreitbergRoehmel.o coin-init.o vandeWiel.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyK6x1p/R.INSTALL20435b22a62c83/coin/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-coin/00new/coin/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coin)
begin installing package ‘party’
* installing *source* package ‘promises’ ...
** this is package ‘promises’ version ‘1.5.0’
** package ‘promises’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (promises)
begin installing package ‘httpuv’
* installing *source* package ‘vctrs’ ...
** this is package ‘vctrs’ version ‘0.6.5’
** package ‘vctrs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAF1krO/R.INSTALL2031f849f137ad/vctrs/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-lazy-character.c -o altrep-lazy-character.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-rle.c -o altrep-rle.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep.c -o altrep.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c arg-counter.c -o arg-counter.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c arg.c -o arg.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c assert.c -o assert.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c bind.c -o bind.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c c-unchop.c -o c-unchop.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c c.c -o c.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c callables.c -o callables.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cast-bare.c -o cast-bare.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cast-dispatch.c -o cast-dispatch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cast.c -o cast.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c compare.c -o compare.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c complete.c -o complete.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c conditions.c -o conditions.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dictionary.c -o dictionary.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dim.c -o dim.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c empty.c -o empty.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c equal.c -o equal.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c expand.c -o expand.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fields.c -o fields.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fill.c -o fill.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c globals.c -o globals.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c group.c -o group.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c growable.c -o growable.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c hash.c -o hash.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c interval.c -o interval.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c match-joint.c -o match-joint.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c match.c -o match.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c missing.c -o missing.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c names.c -o names.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-collate.c -o order-collate.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-groups.c -o order-groups.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-sortedness.c -o order-sortedness.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order-truelength.c -o order-truelength.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c order.c -o order.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c poly-op.c -o poly-op.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c proxy-restore.c -o proxy-restore.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c proxy.c -o proxy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype-common.c -o ptype-common.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype.c -o ptype.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype2-dispatch.c -o ptype2-dispatch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ptype2.c -o ptype2.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rank.c -o rank.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rep.c -o rep.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rlang-dev.c -o rlang-dev.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c rlang.c -o rlang.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c runs.c -o runs.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c set.c -o set.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c shape.c -o shape.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c size-common.c -o size-common.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c size.c -o size.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-array.c -o slice-array.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-assign-array.c -o slice-assign-array.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-assign.c -o slice-assign.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-chop.c -o slice-chop.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice-interleave.c -o slice-interleave.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice.c -o slice.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c split.c -o split.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c subscript-loc.c -o subscript-loc.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c subscript.c -o subscript.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c translate.c -o translate.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-data-frame.c -o type-data-frame.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-date-time.c -o type-date-time.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-factor.c -o type-factor.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-info.c -o type-info.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-integer64.c -o type-integer64.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c type-tibble.c -o type-tibble.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c typeof2-s3.c -o typeof2-s3.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c typeof2.c -o typeof2.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c unspecified.c -o unspecified.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils-dispatch.c -o utils-dispatch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vctrs-core.c -o vctrs-core.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c version.c -o version.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o vctrs.so altrep-lazy-character.o altrep-rle.o altrep.o arg-counter.o arg.o assert.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o empty.o equal.o expand.o fields.o fill.o globals.o group.o growable.o hash.o init.o interval.o match-joint.o match.o missing.o names.o order-collate.o order-groups.o order-sortedness.o order-truelength.o order.o poly-op.o proxy-restore.o proxy.o ptype-common.o ptype.o ptype2-dispatch.o ptype2.o rank.o rep.o rlang-dev.o rlang.o runs.o set.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice-interleave.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-integer64.o type-tibble.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o vctrs-core.o version.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAF1krO/R.INSTALL2031f849f137ad/vctrs/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-vctrs/00new/vctrs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vctrs)
begin installing package ‘pillar’
begin installing package ‘blob’
begin installing package ‘clock’
begin installing package ‘purrr’
begin installing package ‘sparsevctrs’
begin installing package ‘tidyselect’
begin installing package ‘downlit’
begin installing package ‘httr2’
* installing *source* package ‘blob’ ...
** this is package ‘blob’ version ‘1.2.4’
** package ‘blob’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (blob)
begin installing package ‘RSQLite’
* installing *source* package ‘downlit’ ...
** this is package ‘downlit’ version ‘0.4.5’
** package ‘downlit’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (downlit)
* installing *source* package ‘tidyselect’ ...
** this is package ‘tidyselect’ version ‘1.2.1’
** package ‘tidyselect’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyselect)
* installing *source* package ‘sparsevctrs’ ...
** this is package ‘sparsevctrs’ version ‘0.3.5’
** package ‘sparsevctrs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLPQs0E/R.INSTALL2050bb3435e7f/sparsevctrs/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-sparse-double.c -o altrep-sparse-double.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-sparse-integer.c -o altrep-sparse-integer.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-sparse-logical.c -o altrep-sparse-logical.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c altrep-sparse-string.c -o altrep-sparse-string.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sparse-arithmatic.c -o sparse-arithmatic.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sparse-dummy.c -o sparse-dummy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sparse-extractors.c -o sparse-extractors.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sparse-utils.c -o sparse-utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o sparsevctrs.so altrep-sparse-double.o altrep-sparse-integer.o altrep-sparse-logical.o altrep-sparse-string.o init.o sparse-arithmatic.o sparse-dummy.o sparse-extractors.o sparse-utils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLPQs0E/R.INSTALL2050bb3435e7f/sparsevctrs/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-sparsevctrs/00new/sparsevctrs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sparsevctrs)
* installing *source* package ‘purrr’ ...
** this is package ‘purrr’ version ‘1.2.0’
** package ‘purrr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpxvzd3K/R.INSTALL2050b71e34e744/purrr/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c backports.c -o backports.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c cleancall.c -o cleancall.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c coerce.c -o coerce.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c conditions.c -o conditions.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c every-some-none.c -o every-some-none.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c flatten.c -o flatten.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c map.c -o map.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c pluck.c -o pluck.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c transpose.c -o transpose.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c utils.c -o utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o purrr.so backports.o cleancall.o coerce.o conditions.o every-some-none.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpxvzd3K/R.INSTALL2050b71e34e744/purrr/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-purrr/00new/purrr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (purrr)
* installing *source* package ‘kernlab’ ...
** this is package ‘kernlab’ version ‘0.9-33’
** package ‘kernlab’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4Ol1ty/R.INSTALL2011c175ba13d/kernlab/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c brweight.cpp -o brweight.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ctable.cpp -o ctable.o
ctable.cpp: In member function ‘UInt32 ChildTable::up(const UInt32&, UInt32&)’:
ctable.cpp:60:16: warning: variable ‘lcp_idx’ set but not used [-Wunused-but-set-variable]
60 | UInt32 lcp_idx = 0, lcp_prev_idx = 0;
| ^~~~~~~
ctable.cpp:60:29: warning: variable ‘lcp_prev_idx’ set but not used [-Wunused-but-set-variable]
60 | UInt32 lcp_idx = 0, lcp_prev_idx = 0;
| ^~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cweight.cpp -o cweight.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dbreakpt.c -o dbreakpt.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dcauchy.c -o dcauchy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dgpnrm.c -o dgpnrm.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dgpstep.c -o dgpstep.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dprecond.c -o dprecond.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dprsrch.c -o dprsrch.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dspcg.c -o dspcg.o
dspcg.c: In function ‘dspcg’:
dspcg.c:116:47: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable]
116 | double gfnorm, gfnormf, stol = 1e-16, alpha;
| ^~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dtron.c -o dtron.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dtrpcg.c -o dtrpcg.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c dtrqsol.c -o dtrqsol.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c esa.cpp -o esa.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c expdecayweight.cpp -o expdecayweight.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c inductionsort.cpp -o inductionsort.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c kspectrumweight.cpp -o kspectrumweight.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c lcp.cpp -o lcp.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c misc.c -o misc.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c msufsort.cpp -o msufsort.o
In file included from msufsort.cpp:26:
msufsort.h: In member function ‘void MSufSort::PassTandemRepeat()’:
msufsort.h:375:52: warning: ‘lastIndex’ may be used uninitialized [-Wmaybe-uninitialized]
375 | m_lastUnsortedTandemRepeat = (m_ISA[m_lastUnsortedTandemRepeat] = lastIndex);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msufsort.h:356:22: note: ‘lastIndex’ was declared here
356 | unsigned int lastIndex;
| ^~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c solvebqp.c -o solvebqp.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c stringk.c -o stringk.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stringkernel.cpp -o stringkernel.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c svm.cpp -o svm.o
svm.cpp:1790:6: warning: ‘virtual void Solver_B::Solve(int, const Kernel&, double*, schar*, double*, double, double, double, SolutionInfo*, int, int)’ was hidden [-Woverloaded-virtual=]
1790 | void Solver_B::Solve(int l, const Kernel& Q, double *b_, schar *y_,
| ^~~~~~~~
svm.cpp:2152:13: note: by ‘int Solver_B_linear::Solve(int, svm_node* const*, double*, schar*, double*, double*, double, double, double, Solver_B::SolutionInfo*, int, int)’
2152 | int Solve(int l, svm_node * const * x_, double *b_, schar *y_,
| ^~~~~
svm.cpp:1790:6: warning: ‘virtual void Solver_B::Solve(int, const Kernel&, double*, schar*, double*, double, double, double, SolutionInfo*, int, int)’ was hidden [-Woverloaded-virtual=]
1790 | void Solver_B::Solve(int l, const Kernel& Q, double *b_, schar *y_,
| ^~~~~~~~
svm.cpp:2431:14: note: by ‘void Solver_MB::Solve(int, const Kernel&, double, double*, short int*, double*, double, Solver_B::SolutionInfo*, int, int, int, int*)’
2431 | void Solve(int l, const Kernel& Q, double lin, double *alpha_,
| ^~~~~
svm.cpp: In function ‘SEXPREC* tron_optim(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
svm.cpp:3888:17: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
3888 | const char* s;
| ^
svm.cpp: In function ‘SEXPREC* smo_optim(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
svm.cpp:4189:17: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
4189 | const char* s;
| ^
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c wkasailcp.cpp -o wkasailcp.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c wmsufsort.cpp -o wmsufsort.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o init.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4Ol1ty/R.INSTALL2011c175ba13d/kernlab/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-kernlab/00new/kernlab/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘pattern’ in package ‘kernlab’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (kernlab)
* installing *source* package ‘scales’ ...
** this is package ‘scales’ version ‘1.4.0’
** package ‘scales’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scales)
begin installing package ‘ggplot2’
* installing *source* package ‘pillar’ ...
** this is package ‘pillar’ version ‘1.11.1’
** package ‘pillar’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pillar)
begin installing package ‘tibble’
* installing *source* package ‘ModelMetrics’ ...
** this is package ‘ModelMetrics’ version ‘1.2.2.2’
** package ‘ModelMetrics’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3VDLf1/R.INSTALL2045d479bfebc4/ModelMetrics/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c auc_.cpp -o auc_.o
auc_.cpp:39: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
39 | #pragma omp parallel for
auc_.cpp:43: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
43 | #pragma omp parallel for
auc_.cpp:63: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
63 | #pragma omp parallel for
auc_.cpp:107: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
107 | #pragma omp parallel for
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c confusionMatrix_.cpp -o confusionMatrix_.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c error.cpp -o error.o
error.cpp:16: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
16 | #pragma omp parallel for
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c gini_.cpp -o gini_.o
gini_.cpp:19: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
19 | #pragma omp parallel for
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c logLoss_.cpp -o logLoss_.o
logLoss_.cpp:21: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
21 | #pragma omp parallel for
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o ModelMetrics.so RcppExports.o auc_.o confusionMatrix_.o error.o gini_.o logLoss_.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3VDLf1/R.INSTALL2045d479bfebc4/ModelMetrics/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-ModelMetrics/00new/ModelMetrics/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ModelMetrics)
* installing *source* package ‘S4Vectors’ ...
** this is package ‘S4Vectors’ version ‘0.48.0’
** package ‘S4Vectors’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7I0CwD/R.INSTALL2030976629a991/S4Vectors/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c AEbufs.c -o AEbufs.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c DFrame_class.c -o DFrame_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Hits_class.c -o Hits_class.o
In file included from /home/hornik/tmp/R-d-gcc-xtra/include/Rdefines.h:41,
from ../inst/include/S4Vectors_defines.h:18,
from S4Vectors.h:1,
from Hits_class.c:4:
Hits_class.c: In function ‘Hits_new’:
/home/hornik/tmp/R-d-gcc-xtra/include/Rinternals.h:916:33: warning: ‘revmap’ may be used uninitialized [-Wmaybe-uninitialized]
916 | #define defineVar Rf_defineVar
Hits_class.c:291:9: note: in expansion of macro ‘defineVar’
291 | defineVar(install(translateChar(symbol)), revmap, revmap_envir);
| ^~~~~~~~~
Hits_class.c:266:19: note: ‘revmap’ was declared here
266 | SEXP ans, revmap, symbol;
| ^~~~~~
Hits_class.c: In function ‘select_hits’:
Hits_class.c:395:48: warning: ‘is_used’ may be used uninitialized [-Wmaybe-uninitialized]
395 | is_used->elts[ans_elt - 1] = 1;
| ~~~~~~~^~~~~~
Hits_class.c:360:17: note: ‘is_used’ was declared here
360 | CharAE *is_used;
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c LLint_class.c -o LLint_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c List_class.c -o List_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_init_S4Vectors.c -o R_init_S4Vectors.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Rle_class.c -o Rle_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Rle_utils.c -o Rle_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SEXP_utils.c -o SEXP_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SimpleList_class.c -o SimpleList_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c character_utils.c -o character_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c eval_utils.c -o eval_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c hash_utils.c -o hash_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c integer_utils.c -o integer_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c logical_utils.c -o logical_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c map_ranges_to_runs.c -o map_ranges_to_runs.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c raw_utils.c -o raw_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c safe_arithm.c -o safe_arithm.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sort_utils.c -o sort_utils.o
sort_utils.c:267:13: warning: ‘sort_uchar_array’ defined but not used [-Wunused-function]
267 | static void sort_uchar_array(unsigned char *x, int nelt, int desc)
| ^~~~~~~~~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c subsetting_utils.c -o subsetting_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vector_utils.c -o vector_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o S4Vectors.so AEbufs.o DFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7I0CwD/R.INSTALL2030976629a991/S4Vectors/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-S4Vectors/00new/S4Vectors/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List”
Creating a new generic function for ‘unname’ in package ‘S4Vectors’
Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’
Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’
in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame”
Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’
in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table”
Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (S4Vectors)
begin installing package ‘IRanges’
* installing *source* package ‘edgeR’ ...
** this is package ‘edgeR’ version ‘4.8.1’
** package ‘edgeR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9xS24h/R.INSTALL204bba5ca8f8d3/edgeR/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_exports.c -o R_exports.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_process_hairpin_reads.c -o R_process_hairpin_reads.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c add_prior_count.c -o add_prior_count.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c clowess.c -o clowess.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c compute_apl.c -o compute_apl.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c compute_cpm.c -o compute_cpm.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c compute_nbdev.c -o compute_nbdev.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c exact_test_by_dev.c -o exact_test_by_dev.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fmm_spline.c -o fmm_spline.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c glm.c -o glm.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c good_turing.c -o good_turing.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c interpolator.c -o interpolator.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c loess_by_col.c -o loess_by_col.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c object.c -o object.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ql_glm.c -o ql_glm.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c ql_weights.c -o ql_weights.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o edgeR.so R_exports.o R_process_hairpin_reads.o add_prior_count.o clowess.o compute_apl.o compute_cpm.o compute_nbdev.o exact_test_by_dev.o fmm_spline.o glm.o good_turing.o init.o interpolator.o loess_by_col.o object.o ql_glm.o ql_weights.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9xS24h/R.INSTALL204bba5ca8f8d3/edgeR/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-edgeR/00new/edgeR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (edgeR)
* installing *source* package ‘stringi’ ...
** this is package ‘stringi’ version ‘1.8.7’
** package ‘stringi’ successfully unpacked and MD5 sums checked
** using staged installation
checking for R_HOME... /home/hornik/tmp/R-d-gcc-xtra
checking for R... /home/hornik/tmp/R-d-gcc-xtra/bin/R
checking for endianness... little
checking for cat... /usr/bin/cat
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 accepts -g... yes
checking for g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 option to enable C++11 features... none needed
checking whether the C++ compiler supports the 'long long' type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports the Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with 'pkg-config' for the system ICU4C (icu-i18n icu-uc)... 76.1
checking for ICU4C >= 61... yes
checking for additional CPPFLAGS, LDFLAGS, and LIBS required... done
checking whether an ICU4C-based project can be built... yes
checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes
checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes
checking the capabilities of the ICU data library (ucol)... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for elf.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/uconfig_local.h
config.status: creating src/install.libs.R
*** stringi configure summary:
ICU_FOUND=1
STRINGI_CXXSTD=
STRINGI_CXXFLAGS= -fpic
STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H
STRINGI_LDFLAGS= -L/usr/lib/x86_64-linux-gnu
STRINGI_LIBS= -licui18n -licuuc -licudata
*** Compiler settings used:
CXX=g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17
LD=g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17
CXXFLAGS=-g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation
CPPFLAGS=-I/usr/local/include
LDFLAGS=
LIBS=
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcgyR6Z/R.INSTALL1fe1f25d7e5d98/stringi/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_brkiter.cpp -o stri_brkiter.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_callables.cpp -o stri_callables.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_collator.cpp -o stri_collator.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_common.cpp -o stri_common.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_compare.cpp -o stri_compare.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_base.cpp -o stri_container_base.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_listint.cpp -o stri_container_listint.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_listraw.cpp -o stri_container_listraw.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_listutf8.cpp -o stri_container_listutf8.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_regex.cpp -o stri_container_regex.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_usearch.cpp -o stri_container_usearch.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_utf16.cpp -o stri_container_utf16.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_utf8.cpp -o stri_container_utf8.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_encoding_detection.cpp -o stri_encoding_detection.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_encoding_management.cpp -o stri_encoding_management.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_escape.cpp -o stri_escape.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_exception.cpp -o stri_exception.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_ICU_settings.cpp -o stri_ICU_settings.o
In file included from stri_ICU_settings.cpp:37:
uconfig_local.h:42:9: warning: ‘UCONFIG_USE_WINDOWS_LCID_MAPPING_API’ redefined
42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/unicode/platform.h:24,
from /usr/include/unicode/ptypes.h:46,
from stri_external.h:52,
from stri_stringi.h:36,
from stri_ICU_settings.cpp:33:
/usr/include/unicode/uconfig.h:391:12: note: this is the location of the previous definition
391 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_join.cpp -o stri_join.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_length.cpp -o stri_length.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_pad.cpp -o stri_pad.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_prepare_arg.cpp -o stri_prepare_arg.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_random.cpp -o stri_random.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_reverse.cpp -o stri_reverse.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_count.cpp -o stri_search_class_count.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_detect.cpp -o stri_search_class_detect.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_extract.cpp -o stri_search_class_extract.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_locate.cpp -o stri_search_class_locate.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_replace.cpp -o stri_search_class_replace.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_split.cpp -o stri_search_class_split.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_subset.cpp -o stri_search_class_subset.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_class_trim.cpp -o stri_search_class_trim.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_common.cpp -o stri_search_common.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_count.cpp -o stri_search_coll_count.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_split.cpp -o stri_search_coll_split.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_in.cpp -o stri_search_in.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_other_split.cpp -o stri_search_other_split.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_count.cpp -o stri_search_regex_count.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_match.cpp -o stri_search_regex_match.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_split.cpp -o stri_search_regex_split.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_sort.cpp -o stri_sort.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_sprintf.cpp -o stri_sprintf.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_stats.cpp -o stri_stats.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_string8.cpp -o stri_string8.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_stringi.cpp -o stri_stringi.o
In file included from stri_stringi.cpp:40:
uconfig_local.h:42:9: warning: ‘UCONFIG_USE_WINDOWS_LCID_MAPPING_API’ redefined
42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/unicode/platform.h:24,
from /usr/include/unicode/ptypes.h:46,
from stri_external.h:52,
from stri_stringi.h:36,
from stri_stringi.cpp:33:
/usr/include/unicode/uconfig.h:391:12: note: this is the location of the previous definition
391 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_sub.cpp -o stri_sub.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_test.cpp -o stri_test.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_time_zone.cpp -o stri_time_zone.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_time_calendar.cpp -o stri_time_calendar.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_time_symbols.cpp -o stri_time_symbols.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_time_format.cpp -o stri_time_format.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_trans_casemap.cpp -o stri_trans_casemap.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_trans_other.cpp -o stri_trans_other.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_trans_normalization.cpp -o stri_trans_normalization.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_ucnv.cpp -o stri_ucnv.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_uloc.cpp -o stri_uloc.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_utils.cpp -o stri_utils.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c stri_wrap.cpp -o stri_wrap.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o stringi.so stri_brkiter.o stri_callables.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_sprintf.o stri_stats.o stri_string8.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcgyR6Z/R.INSTALL1fe1f25d7e5d98/stringi/src'
installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-stringi/00new/stringi
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringi)
begin installing package ‘stringr’
* installing *source* package ‘httr2’ ...
** this is package ‘httr2’ version ‘1.2.2’
** package ‘httr2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (httr2)
begin installing package ‘gh’
* installing *source* package ‘systemfonts’ ...
** this is package ‘systemfonts’ version ‘1.3.1’
** package ‘systemfonts’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/freetype2 -I/usr/include/libpng16
Using PKG_LIBS=-lfontconfig -lfreetype
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwvPtCs/R.INSTALL203df8691203d2/systemfonts/src'
rm -f systemfonts.so caches.o cpp11.o dev_metrics.o font_matching.o font_local.o font_variation.o font_registry.o ft_cache.o string_shape.o font_metrics.o font_outlines.o font_fallback.o string_metrics.o emoji.o cache_store.o init.o unix/FontManagerLinux.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c caches.cpp -o caches.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cpp11.cpp -o cpp11.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c dev_metrics.cpp -o dev_metrics.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c font_matching.cpp -o font_matching.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c font_local.cpp -o font_local.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c font_variation.cpp -o font_variation.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c font_registry.cpp -o font_registry.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ft_cache.cpp -o ft_cache.o
ft_cache.cpp: In member function ‘FontFaceInfo FreetypeCache::font_info()’:
ft_cache.cpp:251:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘FT_Int’ {aka ‘int’} [-Wsign-compare]
251 | for (size_t i = 0; i < face->num_charmaps; ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c string_shape.cpp -o string_shape.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c font_metrics.cpp -o font_metrics.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c font_outlines.cpp -o font_outlines.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c font_fallback.cpp -o font_fallback.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c string_metrics.cpp -o string_metrics.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c emoji.cpp -o emoji.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cache_store.cpp -o cache_store.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c init.cpp -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/include/freetype2 -I/usr/include/libpng16 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c unix/FontManagerLinux.cpp -o unix/FontManagerLinux.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o systemfonts.so caches.o cpp11.o dev_metrics.o font_matching.o font_local.o font_variation.o font_registry.o ft_cache.o string_shape.o font_metrics.o font_outlines.o font_fallback.o string_metrics.o emoji.o cache_store.o init.o unix/FontManagerLinux.o -lfontconfig -lfreetype -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwvPtCs/R.INSTALL203df8691203d2/systemfonts/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-systemfonts/00new/systemfonts/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (systemfonts)
begin installing package ‘textshaping’
* installing *source* package ‘tibble’ ...
** this is package ‘tibble’ version ‘3.3.0’
** package ‘tibble’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoZLiyd/R.INSTALL20546a4672798c/tibble/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c attributes.c -o attributes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c coerce.c -o coerce.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c matrixToDataFrame.c -o matrixToDataFrame.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoZLiyd/R.INSTALL20546a4672798c/tibble/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-tibble/00new/tibble/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tibble)
begin installing package ‘dplyr’
begin installing package ‘hardhat’
* installing *source* package ‘party’ ...
** this is package ‘party’ version ‘1.3-18’
** package ‘party’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSAVS7w/R.INSTALL204fed35a9bf98/party/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Classes.c -o Classes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Convenience.c -o Convenience.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Distributions.c -o Distributions.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IndependenceTest.c -o IndependenceTest.o
IndependenceTest.c: In function ‘C_GlobalTest’:
IndependenceTest.c:265:21: warning: ‘thisweights’ may be used uninitialized [-Wmaybe-uninitialized]
265 | C_LinStatExpCov(REAL(x), ncol(x), REAL(y), ncol(y),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
266 | thisweights, nrow(x), RECALC,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
267 | PROTECT(GET_SLOT(xmem, PL2_expcovinfSym)),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
268 | xmem);
| ~~~~~
IndependenceTest.c:141:13: note: ‘thisweights’ was declared here
141 | double *thisweights, *pvaltmp, stweights = 0.0;
| ^~~~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c LinearStatistic.c -o LinearStatistic.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Memory.c -o Memory.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Node.c -o Node.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Predict.c -o Predict.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RandomForest.c -o RandomForest.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c S3Classes.c -o S3Classes.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Splits.c -o Splits.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SurrogateSplits.c -o SurrogateSplits.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c TestStatistic.c -o TestStatistic.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c TreeGrow.c -o TreeGrow.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Utils.c -o Utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/mvtnorm/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o party.so Classes.o Convenience.o Distributions.o IndependenceTest.o LinearStatistic.o Memory.o Node.o Predict.o RandomForest.o S3Classes.o Splits.o SurrogateSplits.o TestStatistic.o TreeGrow.o Utils.o init.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSAVS7w/R.INSTALL204fed35a9bf98/party/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-party/00new/party/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (party)
* installing *source* package ‘stringr’ ...
** this is package ‘stringr’ version ‘1.6.0’
** package ‘stringr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringr)
begin installing package ‘reshape2’
begin installing package ‘roxygen2’
* installing *source* package ‘KernelKnn’ ...
** this is package ‘KernelKnn’ version ‘1.1.6’
** package ‘KernelKnn’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp45AtRC/R.INSTALL204fd549a6100f/KernelKnn/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -I. -DARMA_64BIT_WORD -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -I. -DARMA_64BIT_WORD -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c distance_metrics.cpp -o distance_metrics.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o KernelKnn.so RcppExports.o distance_metrics.o init.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp45AtRC/R.INSTALL204fd549a6100f/KernelKnn/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-KernelKnn/00new/KernelKnn/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KernelKnn)
* installing *source* package ‘gh’ ...
** this is package ‘gh’ version ‘1.5.0’
** package ‘gh’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gh)
begin installing package ‘usethis’
* installing *source* package ‘lava’ ...
** this is package ‘lava’ version ‘1.8.2’
** package ‘lava’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lava)
* installing *source* package ‘hardhat’ ...
** this is package ‘hardhat’ version ‘1.4.2’
** package ‘hardhat’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hardhat)
* installing *source* package ‘reshape2’ ...
** this is package ‘reshape2’ version ‘1.4.5’
** package ‘reshape2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXVR0MI/R.INSTALL2058077ce066c6/reshape2/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c melt.cpp -o melt.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o reshape2.so RcppExports.o melt.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXVR0MI/R.INSTALL2058077ce066c6/reshape2/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-reshape2/00new/reshape2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (reshape2)
* installing *source* package ‘usethis’ ...
** this is package ‘usethis’ version ‘3.2.1’
** package ‘usethis’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (usethis)
* installing *source* package ‘bigmemory’ ...
** this is package ‘bigmemory’ version ‘4.6.4’
** package ‘bigmemory’ successfully unpacked and MD5 sums checked
** using staged installation
checking for Sun Studio compiler...
no
checking for OS...
Linux
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdSISug/R.INSTALL203dc57901639e/bigmemory/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DLINUX -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/uuid/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c BigMatrix.cpp -o BigMatrix.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DLINUX -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/uuid/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DLINUX -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/uuid/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c SharedCounter.cpp -o SharedCounter.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DLINUX -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/uuid/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c bigmemory.cpp -o bigmemory.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DLINUX -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/uuid/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c deepcopy.cpp -o deepcopy.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DLINUX -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/uuid/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c util.cpp -o util.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o bigmemory.so BigMatrix.o RcppExports.o SharedCounter.o bigmemory.o deepcopy.o util.o -lrt -lm -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdSISug/R.INSTALL203dc57901639e/bigmemory/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-bigmemory/00new/bigmemory/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘bigmemory’
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘bigmemory’
Creating a generic function for ‘typeof’ from package ‘base’ in package ‘bigmemory’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bigmemory)
begin installing package ‘biglasso’
* installing *source* package ‘roxygen2’ ...
** this is package ‘roxygen2’ version ‘7.3.3’
** package ‘roxygen2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8jojlg/R.INSTALL205809545085f3/roxygen2/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cpp11.cpp -o cpp11.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c escapeExamples.cpp -o escapeExamples.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c isComplete.cpp -o isComplete.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c leadingSpaces.cpp -o leadingSpaces.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c parser2.cpp -o parser2.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c wrapUsage.cpp -o wrapUsage.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o roxygen2.so cpp11.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8jojlg/R.INSTALL205809545085f3/roxygen2/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-roxygen2/00new/roxygen2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (roxygen2)
* installing *source* package ‘RcppEigen’ ...
** this is package ‘RcppEigen’ version ‘0.3.4.0.2’
** package ‘RcppEigen’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAF2bMD/R.INSTALL203d1065b82808/RcppEigen/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppEigen.cpp -o RcppEigen.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fastLm.cpp -o fastLm.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAF2bMD/R.INSTALL203d1065b82808/RcppEigen/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-RcppEigen/00new/RcppEigen/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppEigen)
begin installing package ‘glmnet’
begin installing package ‘ranger’
begin installing package ‘lme4’
* installing *source* package ‘dplyr’ ...
** this is package ‘dplyr’ version ‘1.1.4’
** package ‘dplyr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuFDqyQ/R.INSTALL205799ca94bd3/dplyr/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c chop.cpp -o chop.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c filter.cpp -o filter.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c funs.cpp -o funs.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c group_by.cpp -o group_by.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c group_data.cpp -o group_data.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c imports.cpp -o imports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c init.cpp -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c mask.cpp -o mask.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c mutate.cpp -o mutate.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c reconstruct.cpp -o reconstruct.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c slice.cpp -o slice.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c summarise.cpp -o summarise.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o reconstruct.o slice.o summarise.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuFDqyQ/R.INSTALL205799ca94bd3/dplyr/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-dplyr/00new/dplyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dplyr)
begin installing package ‘tidyr’
* installing *source* package ‘textshaping’ ...
** this is package ‘textshaping’ version ‘1.0.4’
** package ‘textshaping’ successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi
Using PKG_LIBS=-lharfbuzz -lfreetype -lfribidi
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpy1sqBo/R.INSTALL2056723b14333b/textshaping/src'
rm -f textshaping.so cpp11.o face_feature.o hb_shaper.o init.o string_bidi.o string_metrics.o string_shape.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DNDEBUG -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cpp11.cpp -o cpp11.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DNDEBUG -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c face_feature.cpp -o face_feature.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DNDEBUG -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c hb_shaper.cpp -o hb_shaper.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DNDEBUG -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c init.cpp -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DNDEBUG -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c string_bidi.cpp -o string_bidi.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DNDEBUG -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c string_metrics.cpp -o string_metrics.o
string_metrics.cpp: In function ‘std::vector create_font_settings(cpp11::strings, cpp11::integers, std::vector >&)’:
string_metrics.cpp:117:50: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
117 | if (path.size() != index.size() || path.size() != features.size()) {
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DNDEBUG -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/fribidi -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c string_shape.cpp -o string_shape.o
string_shape.cpp: In member function ‘void HarfBuzzShaper::shape_text_run(ShapeInfo&, bool)’:
string_shape.cpp:572:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
572 | for (int i = text_run.run_start; i < text_run.run_end; ++i) {
| ~~^~~~~~~~~~~~~~~~~~
string_shape.cpp:587:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
587 | for (int i = 0; i < n_chars; ++i) {
| ~~^~~~~~~~~
string_shape.cpp: In member function ‘void HarfBuzzShaper::fill_glyph_info(EmbedInfo&)’:
string_shape.cpp:1031:17: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1031 | if (cluster < full_string.size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~
string_shape.cpp: In member function ‘void HarfBuzzShaper::do_alignment(bool)’:
string_shape.cpp:1301:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1301 | no_stretch[index] = no_stretch[index] || index == line_width.size() - 1 || line_must_break[index];
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
string_shape.cpp:1334:31: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1334 | pen_x += line_id.back() == line_width.size() - 1 ? cum_move : 0;
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o textshaping.so cpp11.o face_feature.o hb_shaper.o init.o string_bidi.o string_metrics.o string_shape.o -lharfbuzz -lfreetype -lfribidi -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpy1sqBo/R.INSTALL2056723b14333b/textshaping/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-textshaping/00new/textshaping/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (textshaping)
begin installing package ‘ragg’
* installing *source* package ‘testthat’ ...
** this is package ‘testthat’ version ‘3.3.1’
** package ‘testthat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4EPx97/R.INSTALL204d9c1e726c51/testthat/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-catch.cpp -o test-catch.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-example.cpp -o test-example.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c test-runner.cpp -o test-runner.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o testthat.so init.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4EPx97/R.INSTALL204d9c1e726c51/testthat/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-testthat/00new/testthat/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (testthat)
* installing *source* package ‘ggplot2’ ...
** this is package ‘ggplot2’ version ‘4.0.1’
** package ‘ggplot2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggplot2)
begin installing package ‘prodlim’
* installing *source* package ‘tidyr’ ...
** this is package ‘tidyr’ version ‘1.3.1’
** package ‘tidyr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpR1MnBd/R.INSTALL205bcb6fddaf7f/tidyr/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cpp11.cpp -o cpp11.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c melt.cpp -o melt.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c simplifyPieces.cpp -o simplifyPieces.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o tidyr.so cpp11.o melt.o simplifyPieces.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpR1MnBd/R.INSTALL205bcb6fddaf7f/tidyr/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-tidyr/00new/tidyr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyr)
* installing *source* package ‘prodlim’ ...
** this is package ‘prodlim’ version ‘2025.04.28’
** package ‘prodlim’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7ZShmd/R.INSTALL205e3079784403/prodlim/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c GMLE.c -o GMLE.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IntIndex.c -o IntIndex.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c icens_prodlim.c -o icens_prodlim.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c icens_prodlim_ml.c -o icens_prodlim_ml.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c iindex.c -o iindex.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c life_table.c -o life_table.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c loo.c -o loo.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c neighborhood.c -o neighborhood.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c predict.c -o predict.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c predict_individual_survival.c -o predict_individual_survival.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c prodlim.c -o prodlim.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c prodlim_clustersurv.c -o prodlim_clustersurv.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c prodlim_comprisk.c -o prodlim_comprisk.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c prodlim_multistates.c -o prodlim_multistates.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c prodlim_surv.c -o prodlim_surv.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sindex.c -o sindex.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c summary_prodlim.c -o summary_prodlim.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o prodlim.so GMLE.o IntIndex.o icens_prodlim.o icens_prodlim_ml.o iindex.o init.o life_table.o loo.o neighborhood.o predict.o predict_individual_survival.o prodlim.o prodlim_clustersurv.o prodlim_comprisk.o prodlim_multistates.o prodlim_surv.o sindex.o summary_prodlim.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7ZShmd/R.INSTALL205e3079784403/prodlim/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-prodlim/00new/prodlim/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prodlim)
begin installing package ‘ipred’
* installing *source* package ‘httpuv’ ...
** this is package ‘httpuv’ version ‘1.6.16’
** package ‘httpuv’ successfully unpacked and MD5 sums checked
** using staged installation
** Using libuv found by pkg-config in /usr
** PKG_CFLAGS=
** PKG_LIBS=-luv -lpthread -ldl -lrt -lm
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLi7qIp/R.INSTALL20508328857108/httpuv/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c callback.cpp -o callback.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c callbackqueue.cpp -o callbackqueue.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c filedatasource-unix.cpp -o filedatasource-unix.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c filedatasource-win.cpp -o filedatasource-win.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c fs.cpp -o fs.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c gzipdatasource.cpp -o gzipdatasource.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c http.cpp -o http.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c httprequest.cpp -o httprequest.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c httpresponse.cpp -o httpresponse.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c httpuv.cpp -o httpuv.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c md5.c -o md5.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c mime.cpp -o mime.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c socket.cpp -o socket.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c staticpath.cpp -o staticpath.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c thread.cpp -o thread.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c timegm.cpp -o timegm.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c utils.cpp -o utils.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c uvutil.cpp -o uvutil.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c webapplication.cpp -o webapplication.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c websockets-base.cpp -o websockets-base.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c websockets-hixie76.cpp -o websockets-hixie76.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c websockets-hybi03.cpp -o websockets-hybi03.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c websockets-ietf.cpp -o websockets-ietf.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c websockets.cpp -o websockets.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c winutils.cpp -o winutils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c http-parser/http_parser.c -o http-parser/http_parser.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c sha1/sha1.c -o sha1/sha1.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c base64/base64.cpp -o base64/base64.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o httpuv.so RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o -luv -lpthread -ldl -lrt -lm ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLi7qIp/R.INSTALL20508328857108/httpuv/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-httpuv/00new/httpuv/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (httpuv)
* installing *source* package ‘ipred’ ...
** this is package ‘ipred’ version ‘0.9-15’
** package ‘ipred’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMJTOGw/R.INSTALL205ff114507053/ipred/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SdiffKM.c -o SdiffKM.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o ipred.so SdiffKM.o init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMJTOGw/R.INSTALL205ff114507053/ipred/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-ipred/00new/ipred/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ipred)
* installing *source* package ‘biglasso’ ...
** this is package ‘biglasso’ version ‘1.6.1’
** package ‘biglasso’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoJYz7F/R.INSTALL205afa5b085a36/biglasso/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c binomial.cpp -o binomial.o
binomial.cpp:87: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
87 | #pragma omp parallel for private(j, a1_xi_pos, a0, Delta, u2star_xi_pos, u2star_xi_neg, T_temp_pos, T_temp_neg, tmp_pos, tmp_neg) schedule(static)
binomial.cpp:160: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
160 | #pragma omp parallel for private(j, jj, xCol, sum_xr) schedule(static)
binomial.cpp:184: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
184 | #pragma omp parallel for private(j) schedule(static)
binomial.cpp:901: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
901 | #pragma omp parallel for private(j) schedule(static)
binomial.cpp:915: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
915 | #pragma omp parallel for private(j) schedule(static)
binomial.cpp:1248: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
1248 | #pragma omp parallel for private(j) schedule(static)
binomial.cpp:1262: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
1262 | #pragma omp parallel for private(j) schedule(static)
In file included from utilities.h:19,
from binomial.cpp:1:
biglasso_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’
10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.")
| ^
binomial.cpp: In function ‘SEXPREC* cdfit_binomial_ssr_approx(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
binomial.cpp:694:34: warning: ‘sumS’ may be used uninitialized [-Wmaybe-uninitialized]
694 | violations = check_rest_set(e1, e2, z, xMat, row_idx, col_idx,center, scale, a, lambda[l], sumS, alpha, s, m, n, p);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
binomial.cpp:544:10: note: ‘sumS’ was declared here
544 | double sumS; // temp result sum of s
| ^~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c cox.cpp -o cox.o
cox.cpp:81: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
81 | #pragma omp parallel for private(j, jj, i, k, max_x, min_x, sum_min, sum_max, xTy) schedule(static)
cox.cpp:175: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
175 | #pragma omp parallel for private(j, jj, i, k, max_x, min_x) schedule(static)
cox.cpp:252: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
252 | #pragma omp parallel for private(j, jj, i, k, sum_xs) schedule(static)
cox.cpp:413: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
413 | #pragma omp parallel for private(j, T) schedule(static)
In file included from utilities.h:19,
from cox.cpp:1:
biglasso_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’
10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.")
| ^
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c gaussian.cpp -o gaussian.o
gaussian.cpp:25: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
25 | #pragma omp parallel for schedule(static) private(j, jj, xCol, sum)
gaussian.cpp:53: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
53 | #pragma omp parallel for private(j, sum_xjxmax) schedule(static)
gaussian.cpp:80: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
80 | #pragma omp parallel for private(j, LHS) schedule(static)
gaussian.cpp:769: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
769 | #pragma omp parallel for private(j) schedule(static)
gaussian.cpp:783: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
783 | #pragma omp parallel for private(j) schedule(static)
In file included from utilities.h:19,
from gaussian.cpp:1:
biglasso_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’
10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.")
| ^
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c gaussian_simple.cpp -o gaussian_simple.o
In file included from utilities.h:19,
from gaussian_simple.cpp:1:
biglasso_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’
10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.")
| ^
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c mgaussian.cpp -o mgaussian.o
mgaussian.cpp:182: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
182 | #pragma omp parallel for private(j, jj, xjtx) schedule(static)
mgaussian.cpp:225: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
225 | #pragma omp parallel for schedule(static) private(i, k, j, jj, xCol, xTR, sum2, sum3)
mgaussian.cpp:258: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
258 | #pragma omp parallel for private(i, k, j, jj, xTR, l1, l2, sum) reduction(+:violations) schedule(static)
mgaussian.cpp:299: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
299 | #pragma omp parallel for private(i, k, j, xTR, l1, l2, sum) reduction(+:violations) schedule(static)
mgaussian.cpp:341: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
341 | #pragma omp parallel for private(i, k, j, xTR, l1, l2, sum) reduction(+:violations) schedule(static)
In file included from utilities.h:19,
from mgaussian.cpp:1:
biglasso_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’
10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.")
| ^
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/bigmemory/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c utilities.cpp -o utilities.o
utilities.cpp:391: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
391 | #pragma omp parallel for private(j, sum, l1, l2) reduction(+:violations) schedule(static)
utilities.cpp:423: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
423 | #pragma omp parallel for private(j, sum, l1, l2) reduction(+:violations) schedule(static)
utilities.cpp:453: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
453 | #pragma omp parallel for private(j, sum, l1, l2) reduction(+:violations) schedule(static)
utilities.cpp:487: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
487 | #pragma omp parallel for private(j, sum, l1, l2) reduction(+:violations) schedule(static)
utilities.cpp:519: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
519 | #pragma omp parallel for private(j, sum, l1, l2) reduction(+:violations) schedule(static)
utilities.cpp:553: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
553 | #pragma omp parallel for private(j, sum, l1, l2) reduction(+:violations) schedule(static)
utilities.cpp:585: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
585 | #pragma omp parallel for private(j, sum, l1, l2) reduction(+:violations) schedule(static)
utilities.cpp:617: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
617 | #pragma omp parallel for private(j, sum) schedule(static)
In file included from utilities.h:19,
from utilities.cpp:10:
biglasso_omp.h:10:65: note: ‘#pragma message: Warning: OpenMP is not available, project will be compiled into single-thread code. Use OpenMP-enabled compiler to get benefit of multi-threading.’
10 | "Use OpenMP-enabled compiler to get benefit of multi-threading.")
| ^
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o biglasso.so RcppExports.o binomial.o cox.o gaussian.o gaussian_simple.o init.o mgaussian.o utilities.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoJYz7F/R.INSTALL205afa5b085a36/biglasso/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-biglasso/00new/biglasso/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biglasso)
* installing *source* package ‘IRanges’ ...
** this is package ‘IRanges’ version ‘2.44.0’
** package ‘IRanges’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgxgMbn/R.INSTALL2054f12f59e50a/IRanges/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c CompressedList_class.c -o CompressedList_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Grouping_class.c -o Grouping_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IPosRanges_comparison.c -o IPosRanges_comparison.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IRanges_class.c -o IRanges_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IRanges_constructor.c -o IRanges_constructor.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c NCList.c -o NCList.o
NCList.c:1303:13: warning: ‘NCList_get_y_overlaps_rec’ defined but not used [-Wunused-function]
1303 | static void NCList_get_y_overlaps_rec(const NCList *x_nclist,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
NCList.c:203:22: warning: ‘next_top_down’ defined but not used [-Wunused-function]
203 | static const NCList *next_top_down(NCListWalkingStack *stack,
| ^~~~~~~~~~~~~
NCList.c: In function ‘C_find_overlaps_in_groups_NCList’:
NCList.c:1782:24: warning: ‘ans’ may be used uninitialized [-Wmaybe-uninitialized]
1782 | return ans;
| ^~~
NCList.c:1751:14: note: ‘ans’ was declared here
1751 | SEXP ans;
| ^~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_init_IRanges.c -o R_init_IRanges.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Ranges_class.c -o Ranges_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RleViews_summarization.c -o RleViews_summarization.o
In function ‘viewWhichMaxs_int_RleViews’,
inlined from ‘viewWhichMaxs_RleViews’ at RleViews_summarization.c:579:3,
inlined from ‘C_summarize_RleViews’ at RleViews_summarization.c:694:9:
RleViews_summarization.c:325:54: warning: ‘max’ may be used uninitialized [-Wmaybe-uninitialized]
325 | if (!max_is_initialized || v > max) {
| ~~^~~~~
RleViews_summarization.c: In function ‘C_summarize_RleViews’:
RleViews_summarization.c:316:21: note: ‘max’ was declared here
316 | int max; /* uninitialized */
| ^~~
In function ‘viewWhichMins_int_RleViews’,
inlined from ‘viewWhichMins_RleViews’ at RleViews_summarization.c:546:3,
inlined from ‘C_summarize_RleViews’ at RleViews_summarization.c:686:9:
RleViews_summarization.c:293:54: warning: ‘min’ may be used uninitialized [-Wmaybe-uninitialized]
293 | if (!min_is_initialized || v < min) {
| ~~^~~~~
RleViews_summarization.c: In function ‘C_summarize_RleViews’:
RleViews_summarization.c:284:21: note: ‘min’ was declared here
284 | int min; /* uninitialized */
| ^~~
In function ‘viewMaxs_int_RleViews’,
inlined from ‘viewMaxs_RleViews’ at RleViews_summarization.c:443:3,
inlined from ‘C_summarize_RleViews’ at RleViews_summarization.c:665:9:
RleViews_summarization.c:67:54: warning: ‘max’ may be used uninitialized [-Wmaybe-uninitialized]
67 | if (!max_is_initialized || v > max) {
| ~~^~~~~
RleViews_summarization.c: In function ‘C_summarize_RleViews’:
RleViews_summarization.c:54:21: note: ‘max’ was declared here
54 | int max; /* uninitialized */
| ^~~
In function ‘viewMins_int_RleViews’,
inlined from ‘viewMins_RleViews’ at RleViews_summarization.c:413:3,
inlined from ‘C_summarize_RleViews’ at RleViews_summarization.c:660:9:
RleViews_summarization.c:36:54: warning: ‘min’ may be used uninitialized [-Wmaybe-uninitialized]
36 | if (!min_is_initialized || v < min) {
| ~~^~~~~
RleViews_summarization.c: In function ‘C_summarize_RleViews’:
RleViews_summarization.c:23:21: note: ‘min’ was declared here
23 | int min; /* uninitialized */
| ^~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c coverage_methods.c -o coverage_methods.o
In function ‘shift_and_clip_ranges’,
inlined from ‘compute_coverage_from_IRanges_holder’ at coverage_methods.c:609:12:
coverage_methods.c:579:35: warning: ‘x_end’ may be used uninitialized [-Wmaybe-uninitialized]
579 | if (*out_ranges_are_tiles && x_end != cvg_len)
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
coverage_methods.c: In function ‘compute_coverage_from_IRanges_holder’:
coverage_methods.c:495:28: note: ‘x_end’ was declared here
495 | i, j, x_start, x_end, shift_elt, tmp;
| ^~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c extractListFragments.c -o extractListFragments.o
extractListFragments.c: In function ‘C_find_partition_overlaps’:
extractListFragments.c:85:25: warning: ‘split_partitions_buf’ may be used uninitialized [-Wmaybe-uninitialized]
85 | IntAE_insert_at(split_partitions_buf,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
86 | IntAE_get_nelt(split_partitions_buf),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
87 | q_prev_end);
| ~~~~~~~~~~~
extractListFragments.c:35:16: note: ‘split_partitions_buf’ was declared here
35 | IntAE *split_partitions_buf;
| ^~~~~~~~~~~~~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c inter_range_methods.c -o inter_range_methods.o
inter_range_methods.c: In function ‘reduce_ranges.isra’:
inter_range_methods.c:154:39: warning: ‘gapwidth’ may be used uninitialized [-Wmaybe-uninitialized]
154 | delta += gapwidth;
| ~~~~~~^~~~~~~~~~~
inter_range_methods.c:102:38: note: ‘gapwidth’ was declared here
102 | append_or_drop, max_end, gapwidth, delta, width_inc;
| ^~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c thread_control.c -o thread_control.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_summarization.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o thread_control.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgxgMbn/R.INSTALL2054f12f59e50a/IRanges/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-IRanges/00new/IRanges/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’
Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘startsWith’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘endsWith’ from package ‘base’ in package ‘IRanges’
Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IRanges)
begin installing package ‘XVector’
begin installing package ‘Seqinfo’
* installing *source* package ‘lme4’ ...
** this is package ‘lme4’ version ‘1.1-38’
** package ‘lme4’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRcwSoC/R.INSTALL205bc369c73d13/lme4/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/R-d-gcc-xtra/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c external.cpp -o external.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/R-d-gcc-xtra/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c glmFamily.cpp -o glmFamily.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/R-d-gcc-xtra/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c optimizer.cpp -o optimizer.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/R-d-gcc-xtra/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c predModule.cpp -o predModule.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I'/home/hornik/tmp/R-d-gcc-xtra/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c respModule.cpp -o respModule.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o lme4.so external.o glmFamily.o optimizer.o predModule.o respModule.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRcwSoC/R.INSTALL205bc369c73d13/lme4/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-lme4/00new/lme4/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lme4)
begin installing package ‘arm’
* installing *source* package ‘Seqinfo’ ...
** this is package ‘Seqinfo’ version ‘1.0.0’
** package ‘Seqinfo’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Seqinfo)
* installing *source* package ‘arm’ ...
** this is package ‘arm’ version ‘1.14-4’
** package ‘arm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arm)
* installing *source* package ‘XVector’ ...
** this is package ‘XVector’ version ‘0.50.0’
** package ‘XVector’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7VbDfQ/R.INSTALL206269189b50f5/XVector/src'
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c IRanges_stubs.c -o IRanges_stubs.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c RDS_random_access.c -o RDS_random_access.o
RDS_random_access.c: In function ‘RDS_extract_subarray’:
RDS_random_access.c:796:25: warning: unused variable ‘ans’ [-Wunused-variable]
796 | SEXP subscript, ans;
| ^~~
RDS_random_access.c:793:18: warning: variable ‘x_type’ set but not used [-Wunused-but-set-variable]
793 | SEXPTYPE x_type;
| ^~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c R_init_XVector.c -o R_init_XVector.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SharedDouble_class.c -o SharedDouble_class.o
SharedDouble_class.c: In function ‘SharedDouble_get_show_string’:
SharedDouble_class.c:42:82: warning: format ‘%p’ expects argument of type ‘void *’, but argument 5 has type ‘double *’ [-Wformat=]
42 | "%d-number SharedDouble object (data starting at memory address %p)",
| ~^
| |
| void *
43 | tag_length, REAL(tag));
| ~~~~~~~~~
| |
| double *
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SharedInteger_class.c -o SharedInteger_class.o
SharedInteger_class.c: In function ‘SharedInteger_get_show_string’:
SharedInteger_class.c:41:84: warning: format ‘%p’ expects argument of type ‘void *’, but argument 5 has type ‘int *’ [-Wformat=]
41 | "%d-integer SharedInteger object (data starting at memory address %p)",
| ~^
| |
| void *
| %ls
42 | tag_length, INTEGER(tag));
| ~~~~~~~~~~~~
| |
| int *
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SharedRaw_class.c -o SharedRaw_class.o
SharedRaw_class.c: In function ‘SharedRaw_read_complexes_from_subscript’:
SharedRaw_class.c:396:20: warning: variable ‘src_tag’ set but not used [-Wunused-but-set-variable]
396 | SEXP dest, src_tag;
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c SharedVector_class.c -o SharedVector_class.o
SharedVector_class.c: In function ‘address_as_CHARSXP’:
SharedVector_class.c:22:38: warning: format ‘%p’ expects argument of type ‘void *’, but argument 4 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=]
22 | snprintf(buf, sizeof(buf), "%p", x);
| ~^ ~
| | |
| | SEXP {aka struct SEXPREC *}
| void *
SharedVector_class.c: In function ‘externalptr_show’:
SharedVector_class.c:110:32: warning: format ‘%p’ expects argument of type ‘void *’, but argument 2 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=]
110 | Rprintf(" x address: %p\n", x);
| ~^ ~
| | |
| | SEXP {aka struct SEXPREC *}
| void *
SharedVector_class.c:114:42: warning: format ‘%p’ expects argument of type ‘void *’, but argument 2 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=]
114 | Rprintf(" R_ExternalPtrTag(x): %p\n", s);
| ~^ ~
| | |
| | SEXP {aka struct SEXPREC *}
| void *
SharedVector_class.c:118:48: warning: format ‘%p’ expects argument of type ‘void *’, but argument 2 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=]
118 | Rprintf(" R_ExternalPtrProtected(x): %p\n", s);
| ~^ ~
| | |
| | SEXP {aka struct SEXPREC *}
| void *
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XDouble_class.c -o XDouble_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XInteger_class.c -o XInteger_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XRawList_comparison.c -o XRawList_comparison.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XRaw_class.c -o XRaw_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XVectorList_class.c -o XVectorList_class.o
XVectorList_class.c: In function ‘_new_XRawList_from_CharAEAE’:
XVectorList_class.c:459:17: warning: ‘lkup_length’ may be used uninitialized [-Wmaybe-uninitialized]
459 | _Ocopy_bytes_to_i1i2_with_lkup(0, dest.length - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
460 | (char *) dest.ptr, dest.length,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
461 | src->elts, CharAE_get_nelt(src),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
462 | lkup0, lkup_length);
| ~~~~~~~~~~~~~~~~~~~
XVectorList_class.c:434:13: note: ‘lkup_length’ was declared here
434 | int lkup_length, nelt, i;
| ^~~~~~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c XVector_class.c -o XVector_class.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c io_utils.c -o io_utils.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c slice_methods.c -o slice_methods.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c vector_copy.c -o vector_copy.o
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c view_summarization_methods.c -o view_summarization_methods.o
view_summarization_methods.c: In function ‘get_which_min_from_Ints_holder’:
view_summarization_methods.c:219:45: warning: ‘cur_min’ may be used uninitialized [-Wmaybe-uninitialized]
219 | if (which_min == NA_INTEGER || x < cur_min) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
view_summarization_methods.c:208:19: note: ‘cur_min’ was declared here
208 | int xlen, cur_min, which_min, i, x;
| ^~~~~~~
view_summarization_methods.c: In function ‘get_which_min_from_Doubles_holder’:
view_summarization_methods.c:246:45: warning: ‘cur_min’ may be used uninitialized [-Wmaybe-uninitialized]
246 | if (which_min == NA_INTEGER || x < cur_min) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
view_summarization_methods.c:235:16: note: ‘cur_min’ was declared here
235 | double cur_min, x;
| ^~~~~~~
view_summarization_methods.c: In function ‘get_which_max_from_Ints_holder’:
view_summarization_methods.c:269:45: warning: ‘cur_max’ may be used uninitialized [-Wmaybe-uninitialized]
269 | if (which_max == NA_INTEGER || x > cur_max) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
view_summarization_methods.c:258:19: note: ‘cur_max’ was declared here
258 | int xlen, cur_max, which_max, i, x;
| ^~~~~~~
view_summarization_methods.c: In function ‘get_which_max_from_Doubles_holder’:
view_summarization_methods.c:296:45: warning: ‘cur_max’ may be used uninitialized [-Wmaybe-uninitialized]
296 | if (which_max == NA_INTEGER || x > cur_max) {
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
view_summarization_methods.c:285:16: note: ‘cur_max’ was declared here
285 | double cur_max, x;
| ^~~~~~~
gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o RDS_random_access.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XDouble_class.o XInteger_class.o XRawList_comparison.o XRaw_class.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -lz -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7VbDfQ/R.INSTALL206269189b50f5/XVector/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-XVector/00new/XVector/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XVector)
begin installing package ‘Biostrings’
* installing *source* package ‘ranger’ ...
** this is package ‘ranger’ version ‘0.17.0’
** package ‘ranger’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1fPhwX/R.INSTALL205bbf518e67af/ranger/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c AAA_check_cpp14.cpp -o AAA_check_cpp14.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Data.cpp -o Data.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c DataSparse.cpp -o DataSparse.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Forest.cpp -o Forest.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ForestClassification.cpp -o ForestClassification.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ForestProbability.cpp -o ForestProbability.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ForestRegression.cpp -o ForestRegression.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ForestSurvival.cpp -o ForestSurvival.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Tree.cpp -o Tree.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c TreeClassification.cpp -o TreeClassification.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c TreeProbability.cpp -o TreeProbability.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c TreeRegression.cpp -o TreeRegression.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c TreeSurvival.cpp -o TreeSurvival.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c rangerCpp.cpp -o rangerCpp.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c utility.cpp -o utility.o
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -DR_BUILD -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c utilityRcpp.cpp -o utilityRcpp.o
utilityRcpp.cpp: In function ‘Rcpp::NumericMatrix randomObsNode(Rcpp::IntegerMatrix, Rcpp::NumericVector, Rcpp::IntegerMatrix)’:
utilityRcpp.cpp:47:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
47 | for (size_t i = 0; i < groups.ncol(); ++i) {
| ~~^~~~~~~~~~~~~~~
utilityRcpp.cpp:49:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
49 | for (size_t j = 0; j < groups.nrow(); ++j) {
| ~~^~~~~~~~~~~~~~~
utilityRcpp.cpp: In function ‘void replace_class_counts(Rcpp::List&, Rcpp::NumericMatrix&)’:
utilityRcpp.cpp:150:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
150 | for (size_t i = 0; i < class_counts_old.size(); ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o ranger.so AAA_check_cpp14.o Data.o DataSparse.o Forest.o ForestClassification.o ForestProbability.o ForestRegression.o ForestSurvival.o RcppExports.o Tree.o TreeClassification.o TreeProbability.o TreeRegression.o TreeSurvival.o rangerCpp.o utility.o utilityRcpp.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1fPhwX/R.INSTALL205bbf518e67af/ranger/src'
installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-ranger/00new/ranger/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ranger)
begin installing package ‘missForest’
* installing *source* package ‘RSQLite’ ...
** this is package ‘RSQLite’ version ‘2.4.5’
** package ‘RSQLite’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOQIZjc/R.INSTALL2052e53a8b7c00/RSQLite/src'
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ivendor -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/plogr/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c DbColumn.cpp -o DbColumn.o
In file included from vendor/boost/mpl/aux_/na_assert.hpp:23,
from vendor/boost/mpl/arg.hpp:25,
from vendor/boost/mpl/placeholders.hpp:24,
from vendor/boost/iterator/iterator_categories.hpp:16,
from vendor/boost/iterator/iterator_concepts.hpp:10,
from vendor/boost/range/concepts.hpp:20,
from vendor/boost/range/size_type.hpp:20,
from vendor/boost/range/size.hpp:21,
from vendor/boost/range/functions.hpp:20,
from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30,
from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20,
from vendor/boost/ptr_container/ptr_vector.hpp:20,
from RSQLite.h:17,
from pch.h:1,
from DbColumn.cpp:1:
vendor/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
vendor/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
vendor/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
vendor/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ivendor -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/plogr/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c DbColumnDataSource.cpp -o DbColumnDataSource.o
In file included from vendor/boost/mpl/aux_/na_assert.hpp:23,
from vendor/boost/mpl/arg.hpp:25,
from vendor/boost/mpl/placeholders.hpp:24,
from vendor/boost/iterator/iterator_categories.hpp:16,
from vendor/boost/iterator/iterator_concepts.hpp:10,
from vendor/boost/range/concepts.hpp:20,
from vendor/boost/range/size_type.hpp:20,
from vendor/boost/range/size.hpp:21,
from vendor/boost/range/functions.hpp:20,
from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30,
from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20,
from vendor/boost/ptr_container/ptr_vector.hpp:20,
from RSQLite.h:17,
from pch.h:1,
from DbColumnDataSource.cpp:1:
vendor/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
vendor/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
vendor/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
vendor/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ivendor -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/plogr/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c DbColumnDataSourceFactory.cpp -o DbColumnDataSourceFactory.o
In file included from vendor/boost/mpl/aux_/na_assert.hpp:23,
from vendor/boost/mpl/arg.hpp:25,
from vendor/boost/mpl/placeholders.hpp:24,
from vendor/boost/iterator/iterator_categories.hpp:16,
from vendor/boost/iterator/iterator_concepts.hpp:10,
from vendor/boost/range/concepts.hpp:20,
from vendor/boost/range/size_type.hpp:20,
from vendor/boost/range/size.hpp:21,
from vendor/boost/range/functions.hpp:20,
from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30,
from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20,
from vendor/boost/ptr_container/ptr_vector.hpp:20,
from RSQLite.h:17,
from pch.h:1,
from DbColumnDataSourceFactory.cpp:1:
vendor/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
vendor/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
vendor/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
vendor/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ivendor -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/plogr/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c DbColumnStorage.cpp -o DbColumnStorage.o
In file included from vendor/boost/mpl/aux_/na_assert.hpp:23,
from vendor/boost/mpl/arg.hpp:25,
from vendor/boost/mpl/placeholders.hpp:24,
from vendor/boost/iterator/iterator_categories.hpp:16,
from vendor/boost/iterator/iterator_concepts.hpp:10,
from vendor/boost/range/concepts.hpp:20,
from vendor/boost/range/size_type.hpp:20,
from vendor/boost/range/size.hpp:21,
from vendor/boost/range/functions.hpp:20,
from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30,
from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20,
from vendor/boost/ptr_container/ptr_vector.hpp:20,
from RSQLite.h:17,
from pch.h:1,
from DbColumnStorage.cpp:2:
vendor/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
vendor/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
vendor/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
vendor/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ivendor -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/plogr/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c DbConnection.cpp -o DbConnection.o
In file included from vendor/boost/mpl/aux_/na_assert.hpp:23,
from vendor/boost/mpl/arg.hpp:25,
from vendor/boost/mpl/placeholders.hpp:24,
from vendor/boost/iterator/iterator_categories.hpp:16,
from vendor/boost/iterator/iterator_concepts.hpp:10,
from vendor/boost/range/concepts.hpp:20,
from vendor/boost/range/size_type.hpp:20,
from vendor/boost/range/size.hpp:21,
from vendor/boost/range/functions.hpp:20,
from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30,
from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20,
from vendor/boost/ptr_container/ptr_vector.hpp:20,
from RSQLite.h:17,
from pch.h:1,
from DbConnection.cpp:1:
vendor/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
vendor/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
vendor/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
vendor/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -Ivendor -DRSQLITE_USE_BUNDLED_SQLITE -DSQLITE_ENABLE_RTREE -DSQLITE_ENABLE_FTS3 -DSQLITE_ENABLE_FTS3_PARENTHESIS -DSQLITE_ENABLE_FTS5 -DSQLITE_ENABLE_JSON1 -DSQLITE_ENABLE_STAT4 -DSQLITE_SOUNDEX -DSQLITE_USE_URI=1 -DSQLITE_MAX_LENGTH=2147483647 -DHAVE_USLEEP=1 -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/plogr/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c DbDataFrame.cpp -o DbDataFrame.o
In file included from vendor/boost/mpl/aux_/na_assert.hpp:23,
from vendor/boost/mpl/arg.hpp:25,
from vendor/boost/mpl/placeholders.hpp:24,
from vendor/boost/iterator/iterator_categories.hpp:16,
from vendor/boost/iterator/iterator_concepts.hpp:10,
from vendor/boost/range/concepts.hpp:20,
from vendor/boost/range/size_type.hpp:20,
from vendor/boost/range/size.hpp:21,
from vendor/boost/range/functions.hpp:20,
from vendor/boost/ptr_container/detail/reversible_ptr_container.hpp:30,
from vendor/boost/ptr_container/ptr_sequence_adapter.hpp:20,
from vendor/boost/ptr_container/ptr_vector.hpp:20,
from RSQLite.h:17,
from pch.h:1,
from DbDataFrame.cpp:1:
vendor/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
vendor/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
vendor/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
vendor/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
In file included from vendor/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
from vendor/boost/smart_ptr/detail/yield_k.hpp:23,
from vendor/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
from vendor/boost/smart_ptr/detail/spinlock.hpp:42,
from vendor/boost/smart_ptr/detail/spinlock_pool.hpp:25,
from vendor/boost/smart_ptr/shared_ptr.hpp:29,
from vendor/boost/shared_ptr.hpp:17,
from DbColumn.h:9,
from DbDataFrame.cpp:3:
vendor/boost/config/pragma_message.hpp:24:34: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
| ^~~~~~~
vendor/boost/bind.hpp:36:1: note: in expansion of macro ‘BOOST_PRAGMA_MESSAGE’
36 | BOOST_PRAGMA_MESSAGE(
| ^~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp: In member function ‘cpp11::list DbDataFrame::get_data(std::vector&)’:
DbDataFrame.cpp:58:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::container::stable_vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
58 | for (int i = 0; i < data.size(); i++) {
| ~~^~~~~~~~~~~~~
In file included from vendor/boost/concept/assert.hpp:35,
from vendor/boost/concept_check.hpp:20,
from vendor/boost/range/concepts.hpp:19:
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’:
vendor/boost/concept_check.hpp:167:5: required from ‘struct boost::CopyConstructible >’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/concepts.hpp:125:16: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’
125 | struct IncrementableIteratorConcept : CopyConstructible
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp:54:18: required from here
54 | boost::for_each(data, names, boost::bind(&DbColumn::warn_type_conflicts, _1, _2));
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
In file included from vendor/boost/concept_check.hpp:31:
vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::CopyConstructible >]’
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’:
vendor/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/iterator/iterator_concepts.hpp:114:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp:54:18: required from here
54 | boost::for_each(data, names, boost::bind(&DbColumn::warn_type_conflicts, _1, _2));
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’:
vendor/boost/iterator/iterator_concepts.hpp:114:7: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp:54:18: required from here
54 | boost::for_each(data, names, boost::bind(&DbColumn::warn_type_conflicts, _1, _2));
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::incrementable_traversal_tag]’
37 | ~model()
| ^
vendor/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’:
vendor/boost/range/concepts.hpp:136:13: required from ‘struct boost::range_detail::IncrementableIteratorConcept >’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp:54:18: required from here
54 | boost::for_each(data, names, boost::bind(&DbColumn::warn_type_conflicts, _1, _2));
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::range_detail::IncrementableIteratorConcept >]’
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’:
vendor/boost/concept_check.hpp:233:5: required from ‘struct boost::EqualityComparable >’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/concepts.hpp:147:16: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’
147 | struct SinglePassIteratorConcept
| ^~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp:54:18: required from here
54 | boost::for_each(data, names, boost::bind(&DbColumn::warn_type_conflicts, _1, _2));
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::EqualityComparable >]’
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements >]’:
vendor/boost/concept_check.hpp:208:5: required from ‘struct boost::Convertible’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::Convertible]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/concepts.hpp:152:13: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp:54:18: required from here
54 | boost::for_each(data, names, boost::bind(&DbColumn::warn_type_conflicts, _1, _2));
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
vendor/boost/concept/usage.hpp:20:5: note: in a call to non-static member function ‘boost::concepts::usage_requirements::~usage_requirements() [with Model = boost::Convertible]’
20 | ~usage_requirements() { ((Model*)0)->~Model(); }
| ^
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::Convertible]’:
vendor/boost/range/concepts.hpp:152:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::SinglePassRangeConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied > >’
45 | typedef boost::integral_constant type;
| ^~~~
vendor/boost/concept/detail/general.hpp:72:8: required from ‘struct boost::concepts::requirement_ >)>’
72 | struct requirement_
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/range/size.hpp:62:9: required from ‘Fn2 boost::range::for_each(SinglePassRange1&, SinglePassRange2&, Fn2) [with SinglePassRange1 = boost::container::stable_vector; SinglePassRange2 = std::vector >; Fn2 = boost::_bi::bind_t, boost::_bi::list2, boost::arg<2> > >]’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
DbDataFrame.cpp:54:18: required from here
54 | boost::for_each(data, names, boost::bind(&DbColumn::warn_type_conflicts, _1, _2));
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp:50:47: warning: ‘this’ pointer is null [-Wnonnull]
50 | static void failed() { ((Model*)0)->~Model(); }
| ~~~~~~~~~~~~~~~~~~~^~
vendor/boost/concept/usage.hpp:37:7: note: in a call to non-static member function ‘boost::Convertible::~Convertible() [with X = boost::iterators::random_access_traversal_tag; Y = boost::iterators::single_pass_traversal_tag]’
37 | ~model()
| ^
vendor/boost/concept_check.hpp:208:5: note: in expansion of macro ‘BOOST_CONCEPT_USAGE’
208 | BOOST_CONCEPT_USAGE(Convertible) {
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/general.hpp: In instantiation of ‘static void boost::concepts::requirement::failed() [with Model = boost::concepts::usage_requirements > >]’:
vendor/boost/range/concepts.hpp:158:13: required from ‘struct boost::range_detail::SinglePassIteratorConcept >’
92 | &::boost::concepts::requirement_::failed> \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:32:62: required by substitution of ‘template boost::concepts::detail::yes boost::concepts::detail::has_constraints_(Model*, wrap_constraints*) [with Model = boost::range_detail::SinglePassIteratorConcept >]’
32 | inline yes has_constraints_(Model*, wrap_constraints* = 0);
| ^~~~~~~~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:42:5: required from ‘const bool boost::concepts::not_satisfied > >::value’
44 | , value = sizeof( detail::has_constraints_((Model*)0) ) == sizeof(detail::yes) );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
vendor/boost/concept/detail/has_constraints.hpp:45:51: required from ‘struct boost::concepts::not_satisfied