# library(testthat) library(SuperLearner) if(all(sapply(c("testthat", "ranger", "MASS"), requireNamespace))){ testthat::context("Learner: ranger") data(Boston, package = "MASS") Y_gaus = Boston$medv Y_bin = as.numeric(Boston$medv > 23) # Remove outcome from covariate dataframe. X = Boston[, -14] # Convert to a matrix. X_mat = model.matrix(~ ., data = X) # Remove intercept. X_mat = X_mat[, -1] set.seed(1) ########## # Try just the wrapper itself, not via SuperLearner model = SuperLearner::SL.ranger(Y_gaus, X, X, family = gaussian(), obsWeights = rep(1, nrow(X))) print(model$fit$object) model = SuperLearner::SL.ranger(Y_bin, X, X, family = binomial(), obsWeights = rep(1, nrow(X))) print(model$fit$object) # Confirm matrix X also works. model = SuperLearner::SL.ranger(Y_gaus, X_mat, X, family = gaussian(), obsWeights = rep(1, nrow(X))) print(model$fit$object) model = SuperLearner::SL.ranger(Y_bin, X_mat, X, family = binomial(), obsWeights = rep(1, nrow(X))) print(model$fit$object) ########## # SuperLearner with the wrapper. # Gaussian version. sl = SuperLearner(Y_gaus, X, family = gaussian(), cvControl = list(V = 2), SL.library = c("SL.mean", "SL.ranger")) sl pred = predict(sl, X) summary(pred$pred) # Confirm prediction on matrix version of X. pred2 = predict(sl, X_mat) testthat::expect_equal(pred$pred, pred2$pred) # Binomial version. sl = SuperLearner(Y_bin, X, family = binomial(), cvControl = list(V = 2), SL.library = c("SL.mean", "SL.ranger")) sl pred = predict(sl, X) summary(pred$pred) # Confirm prediction on matrix version of X pred2 = predict(sl, X_mat) testthat::expect_equal(pred$pred, pred2$pred) # Confirm wrapper works with a column called "Y" in the X dataframe. # NOTE: other wrappers that use formulas may fail here, e.g. SL.glm. colnames(X)[1] = "Y" sl = SuperLearner(Y_bin, X, family = binomial(), cvControl = list(V = 2), SL.library = c("SL.mean", "SL.ranger")) sl #################### # TODO: test different argument customizations. #################### # TODO: test hyperparameter optimization. }