library("testthat") # For debugging: force reload of patterns: # rJava::J('org.ohdsi.sql.SqlTranslate')$setReplacementPatterns('inst/csv/replacementPatterns.csv') expect_equal_ignore_spaces <- function(string1, string2) { string1 <- gsub("([;()'+-/|*\n])", " \\1 ", string1) string2 <- gsub("([;()'+-/|*\n])", " \\1 ", string2) string1 <- gsub(" +", " ", string1) string2 <- gsub(" +", " ", string2) expect_equivalent(string1, string2) } expect_match_ignore_spaces <- function(string1, regexp) { string1 <- gsub(" +", " ", string1) expect_match(string1, regexp) } test_that("translate sql server -> PostgreSQL USE", { sql <- translate("USE vocabulary;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "SET search_path TO vocabulary;") }) test_that("translate sql server -> PostgreSQL string concat", { sql <- translate("'x' + b ( 'x' + b)", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "'x' || b ( 'x' || b)") }) test_that("translate sql server -> PostgreSQL string concat", { sql <- translate("a + ';b'", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "a || ';b'") }) test_that("translate sql server -> PostgreSQL string concat", { sql <- translate("a + ';('", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "a || ';('") }) test_that("translate sql server -> PostgreSQL add month", { sql <- translate("DATEADD(mm,1,date)", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "(date + 1*INTERVAL'1 month')") }) test_that("translate sql server -> PostgreSQL date diff (month)", { sql <- translate("SELECT DATEDIFF(month,drug_era_start_date,drug_era_end_date) FROM drug_era;", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "SELECT (extract(year from age(CAST(drug_era_end_date AS DATE), CAST(drug_era_start_date AS DATE)))*12 + extract(month from age(CAST(drug_era_end_date AS DATE), CAST(drug_era_start_date AS DATE)))) FROM drug_era;") }) test_that("translate sql server -> PostgreSQL date diff (hour, minute, second)", { sql <- translate("SELECT DATEDIFF(hour,drug_exposure_start_datetime,drug_exposure_end_datetime) FROM drug_exposure;", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "SELECT (EXTRACT(EPOCH FROM (drug_exposure_end_datetime - drug_exposure_start_datetime)) / 3600) FROM drug_exposure;") sql <- translate("SELECT DATEDIFF(minute,drug_exposure_start_datetime,drug_exposure_end_datetime) FROM drug_exposure;", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "SELECT (EXTRACT(EPOCH FROM (drug_exposure_end_datetime - drug_exposure_start_datetime)) / 60) FROM drug_exposure;") sql <- translate("SELECT DATEDIFF(second,drug_exposure_start_datetime,drug_exposure_end_datetime) FROM drug_exposure;", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "SELECT EXTRACT(EPOCH FROM (drug_exposure_end_datetime - drug_exposure_start_datetime)) FROM drug_exposure;") }) test_that("translate sql server -> Postgres WITH SELECT", { sql <- translate("WITH cte1 AS (SELECT a FROM b) SELECT c FROM cte1;", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "WITH cte1 AS (SELECT a FROM b) SELECT c FROM cte1;") }) test_that("translate sql server -> Postgres WITH SELECT INTO", { sql <- translate("WITH cte1 AS (SELECT a FROM b) SELECT c INTO d FROM cte1;", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "CREATE TABLE d \nAS\nWITH cte1 AS (SELECT a FROM b) SELECT\nc \nFROM\ncte1;" ) }) test_that("translate sql server -> Postgres WITH SELECT INTO without FROM", { sql <- translate("SELECT c INTO d;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "CREATE TABLE d AS\nSELECT\nc ;") }) test_that("translate sql server -> Postgres WITH INSERT INTO SELECT", { sql <- translate("WITH cte1 AS (SELECT a FROM b) INSERT INTO c (d int) SELECT e FROM cte1;", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "WITH cte1 AS (SELECT a FROM b) INSERT INTO c (d int) SELECT e FROM cte1;" ) }) test_that("translate sql server -> Postgres create table if not exists", { sql <- translate("IF OBJECT_ID('cohort', 'U') IS NULL\n CREATE TABLE cohort\n(cohort_definition_id INT);", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "CREATE TABLE IF NOT EXISTS cohort\n (cohort_definition_id INT);") }) test_that("translate sql server -> Postgres select random row", { sql <- translate("SELECT column FROM (SELECT column, ROW_NUMBER() OVER (ORDER BY RAND()) AS rn FROM table) tmp WHERE rn <= 1", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "SELECT column FROM (SELECT column, ROW_NUMBER() OVER (ORDER BY RANDOM()) AS rn FROM table) tmp WHERE rn <= 1" ) }) test_that("translate sql server -> Postgres select random row using hash", { sql <- translate("SELECT column FROM (SELECT column, ROW_NUMBER() OVER (ORDER BY HASHBYTES('MD5',CAST(person_id AS varchar))) tmp WHERE rn <= 1", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "SELECT column FROM (SELECT column, ROW_NUMBER() OVER (ORDER BY MD5(CAST(person_id AS varchar))) tmp WHERE rn <= 1" ) }) test_that("translate sql server -> Postgres SELECT CONVERT(VARBINARY, @a, 1)", { sql <- translate("SELECT ROW_NUMBER() OVER CONVERT(VARBINARY, val, 1) rn WHERE rn <= 1", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "SELECT ROW_NUMBER() OVER CAST(CONCAT('x', val) AS BIT(32)) rn WHERE rn <= 1" ) }) test_that("translate sql server -> PostgreSql TOP", { sql <- translate("SELECT TOP 10 * FROM my_table WHERE a = b;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "SELECT * FROM my_table WHERE a = b LIMIT 10;") }) test_that("translate sql server -> PostgreSql TOP subquery", { sql <- translate("SELECT name FROM (SELECT TOP 1 name FROM my_table WHERE a = b);", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "SELECT name FROM (SELECT name FROM my_table WHERE a = b LIMIT 1);" ) }) test_that("translate sql server -> postgres date to varchar", { sql <- translate("SELECT CONVERT(VARCHAR,start_date,112) FROM table;", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "SELECT TO_CHAR(start_date, 'YYYYMMDD') FROM table;") }) test_that("translate sql server -> postgresql natural log", { sql <- translate("SELECT LOG(number) FROM table", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "SELECT LN(CAST((number) AS REAL)) FROM table") }) test_that("translate sql server -> postgresql log base 10", { sql <- translate("SELECT LOG10(number) FROM table;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "SELECT LOG(10,CAST((number) AS NUMERIC)) FROM table;") }) test_that("translate sql server -> postgresql log any base", { sql <- translate("SELECT LOG(number, base) FROM table", targetDialect = "postgresql") expect_equal_ignore_spaces( sql, "SELECT LOG(CAST(( base) AS NUMERIC),CAST((number) AS NUMERIC)) FROM table" ) }) test_that("translate sql server -> postgres ISNUMERIC", { sql <- translate("SELECT CASE WHEN ISNUMERIC(a) = 1 THEN a ELSE b FROM c;", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "SELECT CASE WHEN CASE WHEN (CAST(a AS VARCHAR) ~ '^([0-9]+\\.?[0-9]*|\\.[0-9]+)$') THEN 1 ELSE 0 END = 1 THEN a ELSE b FROM c;" ) sql <- translate("SELECT a FROM table WHERE ISNUMERIC(a) = 1", targetDialect = "postgresql") expect_equal_ignore_spaces( sql, "SELECT a FROM table WHERE CASE WHEN (CAST(a AS VARCHAR) ~ '^([0-9]+\\.?[0-9]*|\\.[0-9]+)$') THEN 1 ELSE 0 END = 1" ) sql <- translate("SELECT a FROM table WHERE ISNUMERIC(a) = 0", targetDialect = "postgresql") expect_equal_ignore_spaces( sql, "SELECT a FROM table WHERE CASE WHEN (CAST(a AS VARCHAR) ~ '^([0-9]+\\.?[0-9]*|\\.[0-9]+)$') THEN 1 ELSE 0 END = 0" ) }) test_that("Postgres String literal within CTE should be explicitly casted to character type", { sql <- translate("WITH expression AS(SELECT 'my literal', col1, CAST('other literal' as VARCHAR(MAX)), col2 FROM table WHERE a = b) SELECT * FROM expression ORDER BY 1, 2, 3, 4;", targetDialect = "postgresql" ) expect_equal_ignore_spaces( sql, "WITH expression AS (SELECT CAST('my literal' as TEXT), col1, CAST('other literal' as TEXT), col2 FROM table WHERE a = b) SELECT * FROM expression ORDER BY 1, 2, 3, 4;" ) }) test_that("translate sql server -> Postgres analyze table", { sql <- translate("UPDATE STATISTICS results_schema.heracles_results;", targetDialect = "postgresql" ) expect_equal_ignore_spaces(sql, "ANALYZE results_schema.heracles_results;") }) test_that("translate sql server -> Postgres DATETIME and DATETIME2", { sql <- translate("CREATE TABLE x (a DATETIME2, b DATETIME);", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "CREATE TABLE x (a TIMESTAMP, b TIMESTAMP);") }) test_that("translate sql server -> postgresql DROP TABLE IF EXISTS", { sql <- translate("DROP TABLE IF EXISTS test;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "DROP TABLE IF EXISTS test;") }) test_that("translate sql server -> Postgres comments in quotes", { sql <- "WITH cte_all AS ( SELECT * FROM my_table UNION ALL SELECT '(--12 hours fasting)' AS check_description ) INSERT INTO cdm.main SELECT * FROM cte_all;" sql <- translate(sql, targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "WITH cte_all\n AS (SELECT * FROM my_table\nUNION ALL\nSELECT CAST('(--12 hours fasting)' as TEXT) AS check_description\n)\nINSERT INTO cdm.main\nSELECT *\nFROM cte_all;") }) test_that("translate sql server -> Postgres comments in quotes", { sql <- "WITH cte_all AS ( SELECT * FROM my_table UNION ALL SELECT '(/*12 hours fasting)' AS check_description ) INSERT INTO cdm.main SELECT * FROM cte_all;" sql <- translate(sql, targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "WITH cte_all\n AS (SELECT * FROM my_table\nUNION ALL\nSELECT CAST('(/*12 hours fasting)' as TEXT) AS check_description\n)\nINSERT INTO cdm.main\nSELECT *\nFROM cte_all;") }) test_that("translate sql server -> postgresql IIF", { sql <- translate("SELECT IIF(a>b, 1, b) AS max_val FROM table;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "SELECT CASE WHEN a>b THEN 1 ELSE b END AS max_val FROM table ;") }) test_that("translate sql server -> postgresql ALTER TABLE ADD single", { sql <- translate("ALTER TABLE my_table ADD a INT;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "ALTER TABLE my_table ADD COLUMN a INT;") }) test_that("translate sql server -> postgresql ALTER TABLE ADD multiple", { sql <- translate("ALTER TABLE my_table ADD a INT, b INT, c VARCHAR(255);", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "ALTER TABLE my_table ADD COLUMN a INT, ADD COLUMN b INT, ADD COLUMN c VARCHAR(255);") }) test_that("translate sql server -> postgresql ALTER TABLE ADD COLUMN", { # Note: this is incorrect OhdsiSql, but included for legacy reasons (https://github.com/OHDSI/CohortDiagnostics/issues/1080) sql <- translate("ALTER TABLE my_table ADD COLUMN a INT;", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "ALTER TABLE my_table ADD COLUMN a INT;") }) test_that("translate sql server -> postgresql ALTER TABLE ADD CONSTRAINT", { sql <- translate("ALTER TABLE cdm.MEASUREMENT ADD CONSTRAINT xpk_MEASUREMENT PRIMARY KEY NONCLUSTERED (measurement_id);", targetDialect = "postgresql") expect_equal_ignore_spaces(sql, "ALTER TABLE cdm.MEASUREMENT ADD CONSTRAINT xpk_MEASUREMENT PRIMARY KEY (measurement_id);") })