* using log directory 'd:/RCompile/CRANincoming/R-devel/SplitKnockoff.Rcheck' * using R Under development (unstable) (2024-10-11 r87227 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'SplitKnockoff/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SplitKnockoff' version '2.1' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [10s] NOTE Maintainer: 'Yuxuan Chen ' New maintainer: Yuxuan Chen Old maintainer(s): Haoxue Wang License components with restrictions and base license permitting such: MIT + file LICENSE The Description field contains al. (2021) . Please refer to arXiv e-prints via their arXiv DOI . * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SplitKnockoff' can be installed ... WARNING Found the following significant warnings: Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_all.Rd:5: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_all.Rd:19: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_all.Rd:24: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_all.Rd:25: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_all.Rd:25: unknown macro '\nu' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_all.Rd:25: unknown macro '\gamma' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_all.Rd:25: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_screen.Rd:5: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_screen.Rd:19: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_screen.Rd:24: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_screen.Rd:25: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_screen.Rd:25: unknown macro '\nu' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_screen.Rd:25: unknown macro '\gamma' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/cv_screen.Rd:25: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:5: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:5: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:5: unknown macro '\hat' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:20: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:20: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:20: unknown macro '\hat' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:26: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:26: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_fixed.Rd:26: unknown macro '\hat' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_path.Rd:5: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_path.Rd:5: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_path.Rd:25: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.W_path.Rd:25: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:18: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:18: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:19: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:19: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:20: unknown macro '\hat' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:20: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:21: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:21: unknown macro '\lambda' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:21: unknown macro '\nu' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:22: unknown macro '\hat' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:22: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:22: unknown macro '\nu' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:25: unknown macro '\hat' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:25: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:26: unknown macro '\nu' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:27: unknown macro '\hat' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:27: unknown macro '\beta' Warning: D:/temp/RtmpgfU2dM/R.INSTALLbb347ef76567/SplitKnockoff/man/sk.filter.Rd:27: unknown macro '\nu' See 'd:/RCompile/CRANincoming/R-devel/SplitKnockoff.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... WARNING Invalid license file pointers: LICENSE Authors@R field gives more than one person with maintainer role: Yuxuan Chen [aut, cre] (Development of the latest version of the packages) Haoxue Wang [aut, cre] (Development of the first version of the packages) Maintainer field differs from that derived from Authors@R Maintainer: 'Yuxuan Chen ' Authors@R: '' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] NOTE cv_screen: no visible global function definition for 'cv.glmnet' cv_screen: no visible binding for global variable 'sd' sk.create: no visible global function definition for 'ginv' sk.filter: no visible global function definition for 'rnorm' Undefined global functions or variables: cv.glmnet ginv rnorm sd Consider adding importFrom("stats", "rnorm", "sd") to your NAMESPACE file. * checking Rd files ... WARNING prepare_Rd: ./man/cv_all.Rd:5: unknown macro '\beta' prepare_Rd: ./man/cv_all.Rd:19: unknown macro '\beta' prepare_Rd: ./man/cv_all.Rd:24: unknown macro '\beta' prepare_Rd: ./man/cv_all.Rd:25: unknown macro '\beta' prepare_Rd: ./man/cv_all.Rd:25: unknown macro '\nu' prepare_Rd: ./man/cv_all.Rd:25: unknown macro '\gamma' prepare_Rd: ./man/cv_all.Rd:25: unknown macro '\lambda' prepare_Rd: ./man/cv_screen.Rd:5: unknown macro '\beta' prepare_Rd: ./man/cv_screen.Rd:19: unknown macro '\beta' prepare_Rd: ./man/cv_screen.Rd:24: unknown macro '\beta' prepare_Rd: ./man/cv_screen.Rd:25: unknown macro '\beta' prepare_Rd: ./man/cv_screen.Rd:25: unknown macro '\nu' prepare_Rd: ./man/cv_screen.Rd:25: unknown macro '\gamma' prepare_Rd: ./man/cv_screen.Rd:25: unknown macro '\lambda' prepare_Rd: ./man/sk.W_fixed.Rd:5: unknown macro '\beta' prepare_Rd: ./man/sk.W_fixed.Rd:5: unknown macro '\lambda' prepare_Rd: ./man/sk.W_fixed.Rd:5: unknown macro '\hat' prepare_Rd: ./man/sk.W_fixed.Rd:20: unknown macro '\beta' prepare_Rd: ./man/sk.W_fixed.Rd:20: unknown macro '\lambda' prepare_Rd: ./man/sk.W_fixed.Rd:20: unknown macro '\hat' prepare_Rd: ./man/sk.W_fixed.Rd:26: unknown macro '\beta' prepare_Rd: ./man/sk.W_fixed.Rd:26: unknown macro '\lambda' prepare_Rd: ./man/sk.W_fixed.Rd:26: unknown macro '\hat' prepare_Rd: ./man/sk.W_path.Rd:5: unknown macro '\beta' prepare_Rd: ./man/sk.W_path.Rd:5: unknown macro '\lambda' prepare_Rd: ./man/sk.W_path.Rd:25: unknown macro '\beta' prepare_Rd: ./man/sk.W_path.Rd:25: unknown macro '\lambda' prepare_Rd: ./man/sk.filter.Rd:18: unknown macro '\beta' prepare_Rd: ./man/sk.filter.Rd:18: unknown macro '\lambda' prepare_Rd: ./man/sk.filter.Rd:19: unknown macro '\beta' prepare_Rd: ./man/sk.filter.Rd:19: unknown macro '\lambda' prepare_Rd: ./man/sk.filter.Rd:20: unknown macro '\hat' prepare_Rd: ./man/sk.filter.Rd:20: unknown macro '\beta' prepare_Rd: ./man/sk.filter.Rd:21: unknown macro '\beta' prepare_Rd: ./man/sk.filter.Rd:21: unknown macro '\lambda' prepare_Rd: ./man/sk.filter.Rd:21: unknown macro '\nu' prepare_Rd: ./man/sk.filter.Rd:22: unknown macro '\hat' prepare_Rd: ./man/sk.filter.Rd:22: unknown macro '\beta' prepare_Rd: ./man/sk.filter.Rd:22: unknown macro '\nu' prepare_Rd: ./man/sk.filter.Rd:25: unknown macro '\hat' prepare_Rd: ./man/sk.filter.Rd:25: unknown macro '\beta' prepare_Rd: ./man/sk.filter.Rd:26: unknown macro '\nu' prepare_Rd: ./man/sk.filter.Rd:27: unknown macro '\hat' prepare_Rd: ./man/sk.filter.Rd:27: unknown macro '\beta' prepare_Rd: ./man/sk.filter.Rd:27: unknown macro '\nu' * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... WARNING Missing link or links in Rd file 'sk.filter.Rd': '0:-0.4:-8' '0:0.4:2' '0:0.2:2' '0:-0.01:-6' See section 'Cross-references' in the 'Writing R Extensions' manual. Found the following Rd file(s) with Rd \link{} targets missing package anchors: sk.filter.Rd: 0:-0.4:-8, 0:0.4:2, 0:0.2:2, 0:-0.01:-6 Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... OK * DONE Status: 4 WARNINGs, 2 NOTEs