* using log directory ‘/srv/hornik/tmp/CRAN/SpatGC.Rcheck’
* using R Under development (unstable) (2024-04-22 r86468)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘SpatGC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SpatGC’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Mahsa Nadifar <mahsa.nst@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  Baghishani (10:521)
  Fallah (10:533)
  GC (10:164, 10:179, 10:443)
  INLA (10:376)
  Nadifar (10:512)

Suggests or Enhances not in mainstream repositories:
  INLA
Availability using Additional_repositories specification:
  INLA   yes   https://inla.r-inla-download.org/R/testing
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .github
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  .github
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpatGC’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘Rbuildignore.txt’ ‘codecov.yml’ ‘cran-comments.md’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS.md’:
No news entries found.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] NOTE
GClat: no visible global function definition for ‘st_make_valid’
NBlat: no visible global function definition for ‘st_make_valid’
Poislat: no visible global function definition for ‘st_make_valid’
rGClat: no visible global function definition for ‘st_make_valid’
Undefined global functions or variables:
  st_make_valid
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [8s/8s] ERROR
Running examples in ‘SpatGC-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GClat
> ### Title: Fit ICAR Spatial Gamma-Count Model
> ### Aliases: GClat
> 
> ### ** Examples
> 
> # Generate data from the GC spatial regression model with lattice spatial dependency
> W <- rAdj(500) # Generate a random adjacency matrix
> DDl <- rGClat(n = 500, alpha = 1, beta0 = 0.3, beta = c(-0.5, 0.5), W = W, V = 1)
> 
> # Prepare the data
> Y <- DDl$y
> covariate <- DDl$covariate
> ID <- DDl$ID
> 
> # Fit the spatial GC model
> ResultGC <- GClat(Y = Y, ID = ID, covariate = covariate, W = W)
Error in loadNamespace(x) : there is no package called ‘INLA’
Calls: GClat ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 7 NOTEs