* using log directory 'd:/RCompile/CRANincoming/R-devel/SpaDES.core.Rcheck'
* using R Under development (unstable) (2026-01-07 r89288 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'SpaDES.core/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SpaDES.core' version '3.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] INFO
Maintainer: 'Eliot J B McIntire <eliot.mcintire@canada.ca>'

Suggests or Enhances not in mainstream repositories:
  NLMR
Availability using Additional_repositories specification:
  NLMR   yes   https://predictiveecology.r-universe.dev/
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'NLMR'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpaDES.core' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [44s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [23s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [29s] ERROR
  Running 'test-all.R' [28s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  > withr::local_options(spades.debug = FALSE)
  > 
  > ## run all tests using different combinations of env vars
  > if (nzchar(Sys.getenv("NOT_CRAN")) && as.logical(Sys.getenv("NOT_CRAN"))) {
  +   withr::local_options(spades.useBox = FALSE)
  +   # Sys.setenv(R_REPRODUCIBLE_USE_DBI = "false")
  +   test_check("SpaDES.core")
  + } else {
  +   test_check("SpaDES.core")
  + }
  Loading required package: SpaDES.core
  Loading required package: quickPlot
  Loading required package: reproducible
  
  Attaching package: 'SpaDES.core'
  
  The following objects are masked from 'package:stats':
  
      end, start
  
  The following object is masked from 'package:utils':
  
      citation
  
  trying URL 'https://img.shields.io/badge/Made%20with-Markdown-1f425f.png'
  Content type 'image/png' length 2664 bytes
  ==================================================
  downloaded 2664 bytes
  
  [ FAIL 1 | WARN 1 | SKIP 56 | PASS 244 ]
  
  ══ Skipped tests (56) ══════════════════════════════════════════════════════════════════════════════════════════════════
  • {NLMR} is not installed (24): 'test-cache.R:163:3', 'test-cache.R:583:3', 'test-cache.R:630:3', 'test-cache.R:687:3',
    'test-conditionalEvents.R:5:3', 'test-load.R:2:3', 'test-load.R:205:3', 'test-multipleModulePaths.R:4:3',
    'test-objectSynonyms.R:2:3', 'test-paths.R:2:3', 'test-Plots.R:119:3', 'test-save.R:162:3', 'test-save.R:283:3',
    'test-simList.R:2:3', 'test-simList.R:385:3', 'test-simList.R:410:3', 'test-simList.R:500:3',
    'test-simulation.R:227:3', 'test-simulation.R:305:3', 'test-simulation.R:322:3', 'test-simulation.R:504:3',
    'test-simulation.R:1017:3', 'test-simulation.R:1059:3', 'test-timeunits.R:2:3'
  • benchmarking DES (1): 'test-simulation.R:342:3'
  • empty test (1): 'test-parallel.R:1:1'
  • interactive() is not TRUE (1): 'test-Plots.R:204:3'
  • On CRAN (27): 'test-1memory.R:3:3', 'test-cache.R:2:3', 'test-cache.R:238:3', 'test-cache.R:663:3',
    'test-cache.R:705:3', 'test-checkpoint.R:2:3', 'test-checkpoint.R:43:3', 'test-downloadData.R:2:3',
    'test-downloadModule.R:2:3', 'test-downloadModule.R:33:3', 'test-downloadModule.R:64:3',
    'test-downloadModule.R:116:3', 'test-futureEvents.R:2:3', 'test-load.R:115:3', 'test-load.R:320:3',
    'test-load.R:462:3', 'test-load.R:483:3', 'test-mod.R:163:3', 'test-module-deps-methods.R:117:3', 'test-Plots.R:2:3',
    'test-save.R:2:3', 'test-simList.R:223:3', 'test-simList.R:328:3', 'test-simList.R:345:3', 'test-simulation.R:2:3',
    'test-simulation.R:88:3', 'test-timeunits.R:77:3'
  • restartR not possible in automated tests (1): 'test-save.R:365:3'
  • restartR with logging not possible in automated tests (1): 'test-save.R:455:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════════════════════════════════════════════
  ── Error ('test-save.R:572:3'): registerOutputs ────────────────────────────────────────────────────────────────────────
  Error in `grepl(pattern = paste0("^", outputPath(sim)), sim@outputs$file)`: invalid regular expression '^D:\temp\2026_01_08_20_10_17_18332\RtmpW6Jgha/SpaDES/outputs', reason 'Invalid back reference'
  Backtrace:
      ▆
   1. ├─SpaDES.core::simInit(...) at test-save.R:572:3
   2. └─SpaDES.core::simInit(...)
   3.   ├─SpaDES.core::simInit(...)
   4.   └─SpaDES.core::simInit(...)
   5.     ├─base::withCallingHandlers(...)
   6.     ├─SpaDES.core::`outputs<-`(`*tmp*`, value = outputs)
   7.     └─SpaDES.core::`outputs<-`(`*tmp*`, value = outputs)
   8.       └─base::grepl(pattern = paste0("^", outputPath(sim)), sim@outputs$file)
  
  [ FAIL 1 | WARN 1 | SKIP 56 | PASS 244 ]
  Error:
  ! Test failures.
  Execution halted
  Ran 1/1 deferred expressions
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... NOTE
Note: skipping 'iii-cache.Rmd' due to unavailable dependencies: 'NLMR'
* checking PDF version of manual ... [24s] OK
* checking HTML version of manual ... [32s] OK
* DONE
Status: 1 ERROR, 1 NOTE