* using log directory 'd:/RCompile/CRANincoming/R-devel/SpFut.processGBIF.Rcheck'
* using R Under development (unstable) (2026-02-09 r89390 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-02-10 20:20:34 UTC
* checking for file 'SpFut.processGBIF/DESCRIPTION' ... OK
* this is package 'SpFut.processGBIF' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Riley Mummah <rmummah@usgs.gov>'

New submission

Possibly misspelled words in DESCRIPTION:
  GBIF (2:29, 16:170)
  iNaturalist (16:91)
  rgbif (16:51)

Found the following (possibly) invalid URLs:
  URL: https://code.usgs.gov/eastern-ecological-science-center/nearmi/SpFut-processGBIF
    From: DESCRIPTION
    Status: 404
    Message: Not Found
  URL: https://code.usgs.gov/eastern-ecological-science-center/nearmi/SpFut-processGBIF/~/issues
    From: DESCRIPTION
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .gitlab
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  .gitlab
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'SpFut.processGBIF' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'CODE_OF_CONDUCT.md' 'CONTRIBUTING.md' 'DISCLAIMER.md' 'code.json'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... ERROR
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(SpFut.processGBIF)
  > 
  > test_check("SpFut.processGBIF")
  Searching for taxonkey for  Eurycea bislineata 
  Using taxonkey  5218376 
  Downloading data for Eurycea bislineata 
  Saving _problems/test-clean_gbif-9.R
  Searching for taxonkey for  Eurycea bislineata 
  Using taxonkey  5218376 
  Downloading data for Eurycea bislineata 
  Saving _problems/test-download_gbif-11.R
  Searching for taxonkey for  Eurycea bislineata 
  Using taxonkey  5218376 
  Downloading data for Eurycea bislineata 
  Saving _problems/test-process_gbif-12.R
  Searching for taxonkey for  Eurycea bislineata 
  Using taxonkey  5218376 
  Downloading data for Eurycea bislineata 
  Saving _problems/test-process_gbif-29.R
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-clean_gbif.R:6:1'): (code run outside of `test_that()`) ────────
  Error in `.Internal(getOption(x)) %||% default`: supply a username
  Backtrace:
      ▆
   1. └─SpFut.processGBIF::download_gbif(...) at test-clean_gbif.R:6:1
   2.   └─rgbif::occ_download(...)
   3.     └─rgbif::occ_download_prep(...)
   4.       └─rgbif:::check_user(user)
   5.         └─base::getOption("gbif_user", stop("supply a username"))
   6.           └─.Internal(getOption(x)) %||% default
  ── Error ('test-download_gbif.R:8:3'): output should be a list ─────────────────
  Error in `.Internal(getOption(x)) %||% default`: supply a username
  Backtrace:
      ▆
   1. └─SpFut.processGBIF::download_gbif(...) at test-download_gbif.R:8:3
   2.   └─rgbif::occ_download(...)
   3.     └─rgbif::occ_download_prep(...)
   4.       └─rgbif:::check_user(user)
   5.         └─base::getOption("gbif_user", stop("supply a username"))
   6.           └─.Internal(getOption(x)) %||% default
  ── Error ('test-process_gbif.R:7:3'): process_gbif only saves iNat data ────────
  Error in `.Internal(getOption(x)) %||% default`: supply a username
  Backtrace:
      ▆
   1. └─SpFut.processGBIF::process_gbif(...) at test-process_gbif.R:7:3
   2.   └─SpFut.processGBIF::download_gbif(...)
   3.     └─rgbif::occ_download(...)
   4.       └─rgbif::occ_download_prep(...)
   5.         └─rgbif:::check_user(user)
   6.           └─base::getOption("gbif_user", stop("supply a username"))
   7.             └─.Internal(getOption(x)) %||% default
  ── Error ('test-process_gbif.R:24:3'): process_gbif only saves Museum data ─────
  Error in `.Internal(getOption(x)) %||% default`: supply a username
  Backtrace:
      ▆
   1. └─SpFut.processGBIF::process_gbif(...) at test-process_gbif.R:24:3
   2.   └─SpFut.processGBIF::download_gbif(...)
   3.     └─rgbif::occ_download(...)
   4.       └─rgbif::occ_download_prep(...)
   5.         └─rgbif:::check_user(user)
   6.           └─base::getOption("gbif_user", stop("supply a username"))
   7.             └─.Internal(getOption(x)) %||% default
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 0 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'processGBIF.Rmd' using rmarkdown

Quitting from processGBIF.Rmd:55-72 [download-clean]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Internal(getOption(x)) %||% default`:
! supply a username
---
Backtrace:
    ▆
 1. └─SpFut.processGBIF::download_gbif(...)
 2.   └─rgbif::occ_download(...)
 3.     └─rgbif::occ_download_prep(...)
 4.       └─rgbif:::check_user(user)
 5.         └─base::getOption("gbif_user", stop("supply a username"))
 6.           └─.Internal(getOption(x)) %||% default
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'processGBIF.Rmd' failed with diagnostics:
supply a username
--- failed re-building 'processGBIF.Rmd'

SUMMARY: processing the following file failed:
  'processGBIF.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [12s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 3 NOTEs