# Setup ----- sub_adat <- example_data[1:10, c(1:5, 35:37)] long <- pivotExpressionSet(adat2eSet(sub_adat)) # Testing ---- test_that("pivotExpressionSet() returns the correct class and dimensions", { expect_s3_class(long, "tbl_df") expect_equal(dim(long), c(30, 29)) }) test_that("pivotExpressionSet() returns expected metadata columns", { expect_setequal(rownames(sub_adat), long$array_id) expect_setequal(getAnalytes(sub_adat), long$feature) expect_true(all(names(attributes(sub_adat)$Col.Meta) %in% names(long))) expect_true(all(getMeta(sub_adat) %in% names(long))) }) test_that("pivotExpressionSet() preserves analyte values", { expect_equal(sub_adat[order(row.names(sub_adat)),]$seq.10000.28, subset(long, feature == "seq.10000.28")$value) })