* using log directory 'd:/RCompile/CRANincoming/R-devel/SlimR.Rcheck'
* using R Under development (unstable) (2025-07-06 r88390 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'SlimR/DESCRIPTION' ... OK
* this is package 'SlimR' version '1.0.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Zhao qing Wang <851091628@qq.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  Cellmarker (13:70)
  PanglaoDB (14:5)
  SlimR (2:8, 10:14, 16:34)
  dotplot (17:70)
  transcriptomics (11:5)

The Title field starts with the package name.

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SlimR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Celltype_annotation_Bar: no visible global function definition for
  'install.packages'
Celltype_annotation_Bar: no visible global function definition for
  '%>%'
Celltype_annotation_Bar: no visible global function definition for
  'distinct'
Celltype_annotation_Bar: no visible binding for global variable
  'processed'
Celltype_annotation_Bar: no visible global function definition for
  'ggsave'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'Idents'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'theme'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'element_text'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'element_blank'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'labs'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'ggplot'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'aes'
Celltype_annotation_Cellmarker2: no visible binding for global variable
  'Gene'
Celltype_annotation_Cellmarker2: no visible binding for global variable
  'Counts'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'geom_tile'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'scale_fill_gradient'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'theme_minimal'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'margin'
Celltype_annotation_Cellmarker2: no visible global function definition
  for 'ggsave'
Celltype_annotation_Excel: no visible global function definition for
  'install.packages'
Celltype_annotation_Excel: no visible global function definition for
  'setNames'
Celltype_annotation_Excel: no visible global function definition for
  '%>%'
Celltype_annotation_Excel: no visible binding for global variable
  'metric'
Celltype_annotation_Excel: no visible binding for global variable
  'score'
Celltype_annotation_Excel: no visible binding for global variable
  'original'
Celltype_annotation_Excel: no visible binding for global variable
  'scaled_score'
Celltype_annotation_Heatmap: no visible global function definition for
  'install.packages'
Celltype_annotation_Heatmap: no visible global function definition for
  '%>%'
Celltype_annotation_Heatmap: no visible global function definition for
  'distinct'
Celltype_annotation_Heatmap: no visible binding for global variable
  'processed'
Celltype_annotation_Heatmap: no visible global function definition for
  'colorRampPalette'
Celltype_annotation_PanglaoDB: no visible global function definition
  for 'install.packages'
Celltype_annotation_PanglaoDB: no visible global function definition
  for 'theme'
Celltype_annotation_PanglaoDB: no visible global function definition
  for 'element_text'
Celltype_annotation_PanglaoDB: no visible global function definition
  for 'element_blank'
Celltype_annotation_PanglaoDB: no visible global function definition
  for 'labs'
Celltype_annotation_PanglaoDB: no visible global function definition
  for '%>%'
Celltype_annotation_PanglaoDB: no visible global function definition
  for 'all_of'
Celltype_annotation_PanglaoDB: no visible binding for global variable
  'metric'
Celltype_annotation_PanglaoDB: no visible binding for global variable
  'score'
Celltype_annotation_PanglaoDB: no visible binding for global variable
  'gene'
Celltype_annotation_PanglaoDB: no visible binding for global variable
  'scaled_score'
Celltype_annotation_PanglaoDB: no visible global function definition
  for 'ggsave'
Celltype_annotation_Seurat: no visible global function definition for
  'install.packages'
Celltype_annotation_Seurat: no visible global function definition for
  'theme'
Celltype_annotation_Seurat: no visible global function definition for
  'element_text'
Celltype_annotation_Seurat: no visible global function definition for
  'element_blank'
Celltype_annotation_Seurat: no visible global function definition for
  'labs'
Celltype_annotation_Seurat: no visible global function definition for
  '%>%'
Celltype_annotation_Seurat: no visible global function definition for
  'all_of'
Celltype_annotation_Seurat: no visible binding for global variable
  'metric'
Celltype_annotation_Seurat: no visible binding for global variable
  'score'
Celltype_annotation_Seurat: no visible binding for global variable
  'gene'
Celltype_annotation_Seurat: no visible binding for global variable
  'scaled_score'
Celltype_annotation_Seurat: no visible global function definition for
  'ggsave'
Markers_filter_Cellmarker2: no visible global function definition for
  'aggregate'
calculate_mean_expression: no visible global function definition for
  'DefaultAssay'
calculate_mean_expression: no visible global function definition for
  'DefaultAssay<-'
calculate_mean_expression: no visible global function definition for
  'CellsByIdentities'
calculate_mean_expression: no visible global function definition for
  'FetchData'
calculate_mean_expression: no visible global function definition for
  'Idents'
plot_mean_expression: no visible global function definition for
  'DefaultAssay'
plot_mean_expression: no visible global function definition for
  'DefaultAssay<-'
plot_mean_expression: no visible global function definition for
  'CellsByIdentities'
plot_mean_expression: no visible global function definition for
  'FetchData'
plot_mean_expression: no visible global function definition for
  'Idents'
plot_mean_expression: no visible global function definition for
  'ggplot'
plot_mean_expression: no visible global function definition for 'aes'
plot_mean_expression: no visible binding for global variable 'Mean_exp'
plot_mean_expression: no visible binding for global variable 'cluster'
plot_mean_expression: no visible global function definition for
  'geom_col'
plot_mean_expression: no visible global function definition for
  'scale_fill_gradient'
plot_mean_expression: no visible global function definition for 'labs'
plot_mean_expression: no visible global function definition for
  'theme_minimal'
plot_mean_expression: no visible global function definition for 'theme'
plot_mean_expression: no visible global function definition for
  'element_text'
plot_mean_expression: no visible global function definition for
  'element_blank'
read_excel_markers : process_file: no visible global function
  definition for 'excel_sheets'
read_excel_markers : process_file : <anonymous>: no visible global
  function definition for 'read_excel'
read_seurat_markers : <anonymous>: no visible global function
  definition for 'head'
Undefined global functions or variables:
  %>% CellsByIdentities Counts DefaultAssay DefaultAssay<- FetchData
  Gene Idents Mean_exp aes aggregate all_of cluster colorRampPalette
  distinct element_blank element_text excel_sheets gene geom_col
  geom_tile ggplot ggsave head install.packages labs margin metric
  original processed read_excel scale_fill_gradient scaled_score score
  setNames theme theme_minimal
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("stats", "aggregate", "setNames")
  importFrom("utils", "head", "install.packages")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs