* using log directory ‘/srv/hornik/tmp/CRAN/SimpleMapper.Rcheck’ * using R Under development (unstable) (2024-05-23 r86608) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘SimpleMapper/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SimpleMapper’ version ‘1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Thomas Kelly ’ New submission License components with restrictions and base license permitting such: MIT + file LICENSE File 'LICENSE': Based on YEAR: 2024 COPYRIGHT HOLDER: Thomas Bryce Kelly ************************************************************************ Copyright (c) 2024, Thomas Bryce Kelly Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Possibly misspelled words in DESCRIPTION: visulization (9:27) Size of tarball: 44925256 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SimpleMapper’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... NOTE Non-standard files/directories found at top level: ‘create_data’ ‘testing’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... NOTE '::' or ':::' import not declared from: ‘pals’ * checking package vignettes ... OK * checking re-building of vignette outputs ... [4s/4s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘Using_SimpleMapper.rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-3-1.png 288x288 pixels, 8 bits/pixel, 232 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 1843 bytes Input file size = 2629 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1583 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1580 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1580 Output IDAT size = 1580 bytes (263 bytes decrease) Output file size = 1658 bytes (971 bytes = 36.93% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-4-1.png 288x288 pixels, 8 bits/pixel, 240 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 1948 bytes Input file size = 2758 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1690 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1684 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 1684 Output IDAT size = 1684 bytes (264 bytes decrease) Output file size = 1762 bytes (996 bytes = 36.11% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-4-2.png 288x288 pixels, 8 bits/pixel, 242 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 2222 bytes Input file size = 3038 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1973 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1973 Output IDAT size = 1973 bytes (249 bytes decrease) Output file size = 2051 bytes (987 bytes = 32.49% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-5-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 4381 bytes Input file size = 4459 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3386 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3386 Output IDAT size = 3386 bytes (995 bytes decrease) Output file size = 3464 bytes (995 bytes = 22.31% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-5-2.png 288x288 pixels, 8 bits/pixel, 230 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 1910 bytes Input file size = 2690 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1539 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1539 Output IDAT size = 1539 bytes (371 bytes decrease) Output file size = 1617 bytes (1073 bytes = 39.89% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-5-3.png 288x288 pixels, 8 bits/pixel, 234 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 1751 bytes Input file size = 2543 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1482 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1482 Output IDAT size = 1482 bytes (269 bytes decrease) Output file size = 1560 bytes (983 bytes = 38.66% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-5-4.png 288x288 pixels, 8 bits/pixel, 233 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 1907 bytes Input file size = 2696 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1659 Output IDAT size = 1659 bytes (248 bytes decrease) Output file size = 1737 bytes (959 bytes = 35.57% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18339 bytes Input file size = 18441 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14847 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14847 Output IDAT size = 14847 bytes (3492 bytes decrease) Output file size = 14925 bytes (3516 bytes = 19.07% decrease) ** Processing: /srv/hornik/tmp/CRAN/SimpleMapper.Rcheck/vign_test/SimpleMapper/vignettes/Using_SimpleMapper_files/figure-html/unnamed-chunk-7-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8570 bytes Input file size = 9440 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8137 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 7875 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 7812 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 7812 Output IDAT size = 7812 bytes (758 bytes decrease) Output file size = 7890 bytes (1550 bytes = 16.42% decrease) Quitting from lines 104-117 [unnamed-chunk-8] (Using_SimpleMapper.rmd) Error: processing vignette 'Using_SimpleMapper.rmd' failed with diagnostics: there is no package called 'pals' --- failed re-building ‘Using_SimpleMapper.rmd’ SUMMARY: processing the following file failed: ‘Using_SimpleMapper.rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 4 NOTEs