* using log directory 'd:/RCompile/CRANincoming/R-devel/SimBaRepro.Rcheck'
* using R Under development (unstable) (2025-06-13 r88311 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'SimBaRepro/DESCRIPTION' ... OK
* this is package 'SimBaRepro' version '0.0.0.9000'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Xinlong Du <du339@purdue.edu>'

New submission

Version contains large components (0.0.0.9000)

Possibly misspelled words in DESCRIPTION:
  Repro (2:54)

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'SimBaRepro' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'SimBaRepro.Rproj'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [118s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                 user system elapsed
get_CI          37.80   2.42   40.36
plot_grid       35.98   3.36   39.42
confidence_grid 31.82   2.37   34.27
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [18s] ERROR
  Running 'testthat.R' [18s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(SimBaRepro)
  > 
  > test_check("SimBaRepro")
  [ FAIL 12 | WARN 0 | SKIP 0 | PASS 20 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-confidence_grid.R:28:3'): confidence_grid: validates inputs correctly ──
  `confidence_grid(...)` threw an error with unexpected message.
  Expected match: "'res' must be a positive integer"
  Actual message: "unused argument (G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-confidence_grid.R:28:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-confidence_grid.R:39:3'): confidence_grid: validates inputs correctly ──
  `confidence_grid(...)` threw an error with unexpected message.
  Expected match: "'res' must be a positive integer"
  Actual message: "unused argument (G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-confidence_grid.R:39:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-get_CI.R:25:3'): get_CI: input checks ────────────────────────
  `get_CI(...)` threw an error with unexpected message.
  Expected match: "Significance level 'alpha' must be a number"
  Actual message: "unused arguments (j = 1, G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-get_CI.R:25:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-get_CI.R:36:3'): get_CI: input checks ────────────────────────
  `get_CI(...)` threw an error with unexpected message.
  Expected match: "Significance level 'alpha' must be a number between 0 and 1."
  Actual message: "unused arguments (j = 1, G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-get_CI.R:36:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-get_CI.R:47:3'): get_CI: input checks ────────────────────────
  `get_CI(...)` threw an error with unexpected message.
  Expected match: "'tol' must be a positive number."
  Actual message: "unused arguments (j = 1, G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-get_CI.R:47:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-p_value.R:26:3'): p_value: input checks work ─────────────────
  `p_value(...)` threw an error with unexpected message.
  Expected match: "Lengths of inputs 'lower_bds' and 'upper_bds' must match."
  Actual message: "unused argument (G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-p_value.R:26:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-p_value.R:34:3'): p_value: input checks work ─────────────────
  `p_value(...)` threw an error with unexpected message.
  Expected match: "'lower_bds' must be smaller than or equal to 'upper_bds' entry-wise."
  Actual message: "unused argument (G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-p_value.R:34:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-p_value.R:42:3'): p_value: input checks work ─────────────────
  `p_value(...)` threw an error with unexpected message.
  Expected match: "'seeds' must be a 2-dimensional object"
  Actual message: "unused argument (G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-p_value.R:42:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-p_value.R:50:3'): p_value: input checks work ─────────────────
  `p_value(...)` threw an error with unexpected message.
  Expected match: "'seeds' must be a numeric matrix or array without NA values."
  Actual message: "unused argument (G = s_sample)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-p_value.R:50:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-p_value.R:58:3'): p_value: input checks work ─────────────────
  `p_value(...)` threw an error with unexpected message.
  Expected match: "'G' must be a function."
  Actual message: "unused argument (G = c(1, 2))"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-p_value.R:58:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-p_value.R:66:3'): p_value: input checks work ─────────────────
  `p_value(...)` threw an error with unexpected message.
  Expected match: "'G' must be a function with exactly two inputs. The first one is a matrix or an array, the second one is a vector."
  Actual message: "unused argument (G = bad_G)"
  Backtrace:
      ▆
   1. └─testthat::expect_error(...) at test-p_value.R:66:3
   2.   └─testthat:::quasi_capture(...)
   3.     ├─testthat (local) .capture(...)
   4.     │ └─base::withCallingHandlers(...)
   5.     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
  ── Failure ('test-plot_grid.R:11:3'): plot_grid errors ─────────────────────────
  `plot_grid(...)` threw an error with unexpected message.
  Expected match: "'indivator_array' needs to be a 2-dimensional object."
  Actual message: "'indicator_array' needs to be a 2-dimensional object."
  Backtrace:
      ▆
   1. ├─testthat::expect_error(...) at test-plot_grid.R:11:3
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. └─SimBaRepro::plot_grid(...)
  
  [ FAIL 12 | WARN 0 | SKIP 0 | PASS 20 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [420s] OK
* checking PDF version of manual ... [30s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 3 NOTEs