R Under development (unstable) (2024-12-20 r87452 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(Seurat)
Loading required package: SeuratObject
Loading required package: sp

Attaching package: 'SeuratObject'

The following objects are masked from 'package:base':

    intersect, t

> #
> # # Run tests for 'v3'
> # message('Run tests for v3 assay')
> # options(Seurat.object.assay.version = 'v3')
> # test_check("Seurat")
> 
> # Run tests for 'v5'
> message('Run tests for v5 assay')
Run tests for v5 assay
> options(Seurat.object.assay.version = 'v5')
> test_check("Seurat")

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Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck

Number of nodes: 80
Number of edges: 525

Running Louvain algorithm...
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Maximum modularity in 10 random starts: 0.8255
Number of communities: 6
Elapsed time: 0 seconds
Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck

Number of nodes: 80
Number of edges: 525

Running Louvain algorithm...
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Maximum modularity in 10 random starts: 0.8255
Number of communities: 6
Elapsed time: 0 seconds
Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck

Number of nodes: 80
Number of edges: 525

Running Louvain algorithm with multilevel refinement...
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Maximum modularity in 10 random starts: 0.8255
Number of communities: 6
Elapsed time: 0 seconds
Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck

Number of nodes: 80
Number of edges: 525

Running smart local moving algorithm...
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Maximum modularity in 10 random starts: 0.8255
Number of communities: 6
Elapsed time: 0 seconds
Performing log-normalization
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Performing log-normalization
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|

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Performing log-normalization
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|

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Modularity Optimizer version 1.3.0 by Ludo Waltman and Nees Jan van Eck

Number of nodes: 80
Number of edges: 2045

Running Louvain algorithm...
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Maximum modularity in 10 random starts: -0.0613
Number of communities: 64
Elapsed time: 0 seconds
Performing log-normalization
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

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[ FAIL 0 | WARN 1 | SKIP 29 | PASS 695 ]

══ Skipped tests (29) ══════════════════════════════════════════════════════════
• On CRAN (29): 'test_differential_expression.R:307:3',
  'test_differential_expression.R:349:3',
  'test_differential_expression.R:455:3', 'test_dimensional_reduction.R:55:3',
  'test_integratedata.R:111:3', 'test_integration.R:74:3',
  'test_integration.R:105:3', 'test_integration.R:136:3',
  'test_integration.R:170:3', 'test_integration.R:202:3',
  'test_integration.R:234:3', 'test_integration.R:264:3',
  'test_integration.R:306:3', 'test_integration.R:335:3',
  'test_integration.R:365:3', 'test_integration5.R:38:3',
  'test_integration5.R:331:3', 'test_objects.R:6:3',
  'test_preprocessing.R:140:3', 'test_preprocessing.R:158:3',
  'test_preprocessing.R:433:3', 'test_preprocessing.R:554:3',
  'test_read_mtx.R:4:3', 'test_read_mtx.R:18:3', 'test_transferdata.R:65:3',
  'test_transferdata.R:88:3', 'test_transferdata.R:100:3',
  'test_transferdata.R:112:3', 'test_transferdata.R:128:3'

[ FAIL 0 | WARN 1 | SKIP 29 | PASS 695 ]
> 
> 
> 
> proc.time()
   user  system elapsed 
 135.09    8.43  148.92