R Under development (unstable) (2023-11-16 r85542 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(Seurat) Loading required package: SeuratObject Loading required package: sp Attaching package: 'SeuratObject' The following objects are masked from 'package:base': %||%, intersect Attaching package: 'Seurat' The following object is masked from 'package:base': %||% > # > # # Run tests for 'v3' > # message('Run tests for v3 assay') > # options(Seurat.object.assay.version = 'v3') > # test_check("Seurat") > > # Run tests for 'v5' > message('Run tests for v5 assay') Run tests for v5 assay > options(Seurat.object.assay.version = 'v5') > test_check("Seurat") | | | 0% | |======================================================================| 100% Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% | | | 0% | |======================================================================| 100% [ FAIL 0 | WARN 0 | SKIP 29 | PASS 542 ] ══ Skipped tests (29) ══════════════════════════════════════════════════════════ • On CRAN (29): 'test_differential_expression.R:286:3', 'test_differential_expression.R:328:3', 'test_differential_expression.R:425:3', 'test_dimensional_reduction.R:55:3', 'test_integratedata.R:111:3', 'test_integratedata.R:180:3', 'test_integration.R:74:3', 'test_integration.R:105:3', 'test_integration.R:136:3', 'test_integration.R:170:3', 'test_integration.R:202:3', 'test_integration.R:234:3', 'test_integration.R:264:3', 'test_integration.R:306:3', 'test_integration.R:335:3', 'test_integration.R:365:3', 'test_objects.R:6:3', 'test_preprocessing.R:140:3', 'test_preprocessing.R:158:3', 'test_preprocessing.R:401:3', 'test_preprocessing.R:455:3', 'test_preprocessing.R:477:3', 'test_read_mtx.R:4:3', 'test_read_mtx.R:18:3', 'test_transferdata.R:65:3', 'test_transferdata.R:88:3', 'test_transferdata.R:100:3', 'test_transferdata.R:112:3', 'test_transferdata.R:128:3' [ FAIL 0 | WARN 0 | SKIP 29 | PASS 542 ] > > > > proc.time() user system elapsed 57.84 61.60 124.85