# Tests for functions in visualization.R set.seed(42) # Tests for visualization utilities # ------------------------------------------------------------------------------ pbmc_small[["tsne_new"]] <- CollapseEmbeddingOutliers(pbmc_small, reduction = "tsne", reduction.key = 'tsne_', outlier.sd = 0.5) test_that("CollapseEmbeddingOutliers works", { expect_equal(Embeddings(pbmc_small[["tsne_new"]])[1, 1], -12.59713, tolerance = 1e-6) expect_equal(colSums(x = Embeddings(object = pbmc_small[["tsne_new"]])), c(-219.9218, 182.9215), check.attributes = FALSE, tolerance = 1e-5) }) test_that("DiscretePalette works", { isColors <- function(x) { all(grepl("#[0-9A-Fa-f]{6}", x)) } expect_true(isColors(DiscretePalette(26))) expect_true(isColors(DiscretePalette(32))) expect_true(isColors(DiscretePalette(36))) expect_warning(DiscretePalette(50), "Not enough colours") })