downloading reverse dependencies ... downloading Patterns_1.6.tar.gz ... ok installing dependencies ‘c060’, ‘Cascade’, ‘CascadeData’, ‘jetset’, ‘Mfuzz’, ‘msgps’, ‘SelectBoost’, ‘tnet’, ‘varbvs’ also installing the dependencies ‘widgetTools’, ‘DynDoc’, ‘tkWidgets’, ‘mlegp’, ‘peperr’, ‘penalizedSVM’ begin installing package ‘widgetTools’ begin installing package ‘DynDoc’ begin installing package ‘mlegp’ begin installing package ‘peperr’ begin installing package ‘msgps’ begin installing package ‘varbvs’ begin installing package ‘CascadeData’ begin installing package ‘jetset’ begin installing package ‘tnet’ * installing *source* package ‘CascadeData’ ... ** this is package ‘CascadeData’ version ‘1.5’ ** package ‘CascadeData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CascadeData) * installing *source* package ‘DynDoc’ ... ** this is package ‘DynDoc’ version ‘1.86.0’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DynDoc) * installing *source* package ‘msgps’ ... ** this is package ‘msgps’ version ‘1.3.5’ ** package ‘msgps’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpigjhfD/R.INSTALL169773643189d1/msgps/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GPS_v3.2.c -o GPS_v3.2.o GPS_v3.2.c: In function ‘gps’: GPS_v3.2.c:71:13: warning: variable ‘flag_St’ set but not used [-Wunused-but-set-variable] 71 | int flag_St; | ^~~~~~~ GPS_v3.2.c: In function ‘cvgps’: GPS_v3.2.c:433:13: warning: variable ‘flag_St’ set but not used [-Wunused-but-set-variable] 433 | int flag_St; | ^~~~~~~ GPS_v3.2.c: In function ‘DFMODIFIED2’: GPS_v3.2.c:1195:13: warning: variable ‘flag_BtBt0’ set but not used [-Wunused-but-set-variable] 1195 | int flag_BtBt0; | ^~~~~~~~~~ GPS_v3.2.c: In function ‘gps’: GPS_v3.2.c:362:107: warning: ‘temp’ may be used uninitialized [-Wmaybe-uninitialized] 362 | REAL(tuning_stand)[step0] = REAL(tuning_stand)[step0-1] + REAL(ex_standardize_vec)[jstar] * temp; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ GPS_v3.2.c:93:16: note: ‘temp’ was declared here 93 | double temp; | ^~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o msgps.so GPS_v3.2.o registerDynamicSymbol.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpigjhfD/R.INSTALL169773643189d1/msgps/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-msgps/00new/msgps/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (msgps) * installing *source* package ‘widgetTools’ ... ** this is package ‘widgetTools’ version ‘1.86.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (widgetTools) begin installing package ‘tkWidgets’ * installing *source* package ‘mlegp’ ... ** this is package ‘mlegp’ version ‘3.1.9’ ** package ‘mlegp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjFBlUx/R.INSTALL16976d25f08b8f/mlegp/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFMT.c -o SFMT.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lbfgs.c -o lbfgs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp.c -o mlegp.o In file included from mlegp.c:9: matrix_vector.h:360:13: warning: ‘printVector’ defined but not used [-Wunused-function] 360 | static void printVector(const char *fmt, const double *b, int m) | ^~~~~~~~~~~ matrix_vector.h:346:13: warning: ‘printPackedMatrix’ defined but not used [-Wunused-function] 346 | static void printPackedMatrix(const char *fmt, const double *a, int n) | ^~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp_init.c -o mlegp_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nelder_mead_min.c -o nelder_mead_min.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mlegp.so SFMT.o lbfgs.o mlegp.o mlegp_init.o nelder_mead_min.o print.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjFBlUx/R.INSTALL16976d25f08b8f/mlegp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mlegp/00new/mlegp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlegp) begin installing package ‘penalizedSVM’ * installing *source* package ‘peperr’ ... ** this is package ‘peperr’ version ‘1.5’ ** package ‘peperr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpcs7zel/R.INSTALL16976b28bf6b7/peperr/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_peperr.c -o R_init_peperr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c noinf_R.c -o noinf_R.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o peperr.so R_init_peperr.o noinf_R.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpcs7zel/R.INSTALL16976b28bf6b7/peperr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-peperr/00new/peperr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (peperr) * installing *source* package ‘tnet’ ... ** this is package ‘tnet’ version ‘3.0.16’ ** package ‘tnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tnet) begin installing package ‘Cascade’ * installing *source* package ‘penalizedSVM’ ... ** this is package ‘penalizedSVM’ version ‘1.1.4’ ** package ‘penalizedSVM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (penalizedSVM) begin installing package ‘c060’ * installing *source* package ‘tkWidgets’ ... ** this is package ‘tkWidgets’ version ‘1.86.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tkWidgets) begin installing package ‘Mfuzz’ * installing *source* package ‘varbvs’ ... ** this is package ‘varbvs’ version ‘2.6-10’ ** package ‘varbvs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-3) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeZDCCW/R.INSTALL16977967d9b6eb/varbvs/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diagsq.c -o diagsq.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diagsqr.c -o diagsqr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c varbvs.c -o varbvs.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c varbvsnormupdate_rcpp.cpp -o varbvsnormupdate_rcpp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c varbvsr.c -o varbvsr.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o varbvs.so RcppExports.o diagsq.o diagsqr.o init.o misc.o varbvs.o varbvsnormupdate_rcpp.o varbvsr.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeZDCCW/R.INSTALL16977967d9b6eb/varbvs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-varbvs/00new/varbvs/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (varbvs) * installing *source* package ‘jetset’ ... ** this is package ‘jetset’ version ‘3.4.0’ ** package ‘jetset’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jetset) * installing *source* package ‘c060’ ... ** this is package ‘c060’ version ‘0.3-1’ ** package ‘c060’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (c060) * installing *source* package ‘Mfuzz’ ... ** this is package ‘Mfuzz’ version ‘2.68.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Mfuzz) * installing *source* package ‘Cascade’ ... ** this is package ‘Cascade’ version ‘2.2’ ** package ‘Cascade’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Cascade) begin installing package ‘SelectBoost’ * installing *source* package ‘SelectBoost’ ... ** this is package ‘SelectBoost’ version ‘2.3.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SelectBoost) checking SelectBoost_2.3.0.tar.gz ... checking Patterns_1.6.tar.gz ... Depends: Package: SelectBoost Depends: R (>= 3.5) Imports: lars, glmnet, igraph, parallel, msgps, Rfast, methods, Cascade, graphics, grDevices, varbvs, spls, abind Timings: user system elapsed SelectBoost 78.545 7.684 88.997 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 1 Check results summary: SelectBoost ... NOTE * checking CRAN incoming feasibility ... [6s/8s] NOTE rdepends_Patterns ... OK