* using log directory ‘/srv/hornik/tmp/CRAN/SWMPrExtension.Rcheck’ * using R Under development (unstable) (2024-01-08 r85794) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (3) Debian flang-new version 17.0.6 (3) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘SWMPrExtension/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SWMPrExtension’ version ‘2.2.5’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/6s] NOTE Maintainer: ‘Matt Dornback ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Estuarine (7:66) ISSN (14:29) Rudis (15:5) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-11-17 for policy violation. On Internet access. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SWMPrExtension’ can be installed ... [10s/10s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/13s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) import_local_nut.Rd:39: Lost braces 39 | Marcus Beck, Julie Padilla (additional of code{collMthd} argument) | ^ checkRd: (-1) national_sk_map.Rd:36: Lost braces; missing escapes or markup? 36 | Create a base map of the US with options for including AK, HI, and PR. The user can choose which states and NERRS reserves to highlight. An early 'sp'-based version of this function by Julie Padilla was developed, in part, from a blog post by Bob Rudis. The current {sf}-based version, by Dave Eslinger, uses an approach from the r-spatial tutorial by Mel Moreno and Mathieu Basille. | ^ checkRd: (-1) res_custom_map.Rd:59: Lost braces; missing escapes or markup? 59 | returns a {ggplot} object | ^ checkRd: (-1) res_custom_sk_map.Rd:61: Lost braces; missing escapes or markup? 61 | returns a {ggplot} object | ^ checkRd: (-1) res_local_map.Rd:53: Lost braces; missing escapes or markup? 53 | returns a {ggplot} object | ^ checkRd: (-1) res_national_map.Rd:30: Lost braces; missing escapes or markup? 30 | Create a base map of the US with options for including AK, HI, and PR. The user can choose which states and NERRS reserves to highlight. An early 'sp'-based version of this function by Julie Padilla was developed, in part, from a blog post by Bob Rudis. The current {sf}-based version, by Dave Eslinger, uses an approach from the r-spatial tutorial by Mel Moreno and Mathieu Basille. | ^ checkRd: (-1) threshold_summary.Rd:57: Lost braces 57 | This function provides a graphical or tabular summary of the results from \code{threshold_identification}. The user can summarize results on a monthly, seasonal, or annual basis by specifying \code{summary_type = c('month', 'season', 'year')}. If \code{summary_type = 'season'}, then the user should also define \code{season}, \code{season_names}, and \code{season_start}, as required by |code{\link{assign_season}}. The user can specify \code{'month'} for nutrient parameters, but this is not recommended and will produce a warning. | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [38s/31s] NOTE Examples with CPU time > 2.5 times elapsed time user system elapsed ratio threshold_summary 3.249 0.105 1.201 2.793 * checking PDF version of manual ... [4s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs