* using log directory ‘/srv/hornik/tmp/CRAN_pretest/SVAlignR.Rcheck’
* using R Under development (unstable) (2025-08-24 r88696)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3+b1)
    Debian flang-new version 19.1.7 (3+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘SVAlignR/DESCRIPTION’ ... OK
* this is package ‘SVAlignR’ version ‘0.8.1’
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Kevin R. Coombes <krc@silicovore.com>’

New submission
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: ‘msa’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR, 1 NOTE