* using log directory ‘/srv/hornik/tmp/CRAN_pretest/SSHAARP.Rcheck’
* using R Under development (unstable) (2024-12-07 r87428)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘SSHAARP/DESCRIPTION’ ... OK
* this is package ‘SSHAARP’ version ‘2.0.4’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] NOTE
Maintainer: ‘Livia Tran <livia.tran@ucsf.edu>’

Possibly misspelled words in DESCRIPTION:
  prebundled (16:869)

Size of tarball: 6140375 bytes
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Rd file 'PALM.Rd':
  \examples lines wider than 100 characters:
     #Example to produce a motif color frequency heat map where migrant populations are filtered out, mask is off
     ## Not run: PALM("DRB1*26F~28E~30Y", variantType="motif", mask = FALSE, filterMigrant=TRUE, filename = SSHAARP::solberg_dataset)
     #Example to produce an allele greyscale heat map where migrant populations are not filtered, mask is on
     ## Not run: PALM("DRB1*01:01", variantType="allele", mask = TRUE, color=FALSE, filterMigrant=FALSE, filename = SSHAARP::solberg_dataset ... [TRUNCATED]
     #Example to produce a color allele frequency heat map with mapScale T, and where the allele has more than 2 fields
     ## Not run: PALM("DRB1*01:01:01", variantType="allele", filterMigrant=FALSE, mapScale=TRUE, filename = SSHAARP::solberg_dataset)
     #Example to produce a color haplotype frequency heat map with all default parameters with the mock haplotype dataset
     ## Not run: PALM("DRB1*01:01~A*01:01", variantType = "haplotype", filename = SSHAARP::mock_haplotype_dataset)

These lines will be truncated in the PDF manual.
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* DONE
Status: 2 NOTEs