* using log directory ‘/srv/hornik/tmp/CRAN/SPUTNIK.Rcheck’
* using R Under development (unstable) (2024-03-12 r86099)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘SPUTNIK/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SPUTNIK’ version ‘1.4.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Paolo Inglese <p.inglese@outlook.com>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  IMS (10:24)
  Ims (3:42)
  MSI (10:17)
  ROI (11:23)
  SPatially (3:8)
  aUTomatic (3:18)
  deNoising (3:28)
  spectrometry (9:60)
  toolKit (3:46)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2023-11-06 as issues were not corrected
    in time.

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid URLs:
  URL: http://cran.r-project.org/package=SPUTNIK
    From: README.md
    CRAN URL not in canonical form
  URL: http://cran.rstudio.com/package=SPUTNIK
    From: README.md
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  Canonical CRAN.R-project.org URLs use https.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘SPUTNIK’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) globalPeaksFilter.Rd:43: Lost braces
    43 | \code{peak.filter} object. See link{applyPeaksFilter}.
       |                                    ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [6s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [105s/110s] OK
  Running ‘test_constructors.R’ [3s/3s]
  Running ‘test_ext_data.R’ [6s/8s]
  Running ‘test_global_ref_filter.R’ [41s/42s]
  Running ‘test_pixel_count_filter.R’ [54s/56s]
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs