* using log directory ‘/srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck’ * using R Under development (unstable) (2025-10-20 r88955) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (7) Debian flang-new version 19.1.7 (7) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘SMYM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SMYM’ version ‘0.0.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Umar Aziz ’ New submission Possibly misspelled words in DESCRIPTION: THI (8:76, 10:73, 14:56, 15:61) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘SMYM’ can be installed ... [1s/1s] WARNING Found the following significant warnings: Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_nqr.Rd:27: unexpected section header '\value' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_nqr.Rd:38: unexpected section header '\description' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_nqr.Rd:45: unexpected END_OF_INPUT ' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_qhl.Rd:29: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_qhl.Rd:31: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_qhl.Rd:33: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_qhl.Rd:38: unexpected section header '\value' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_qhl.Rd:46: unexpected section header '\description' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_qhl.Rd:56: unexpected section header '\seealso' Warning: /srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00_pkg_src/SMYM/man/fit_qhl.Rd:60: unexpected END_OF_INPUT ' See ‘/srv/hornik/tmp/CRAN_pretest/SMYM.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE fit_qhl: no visible global function definition for ‘head’ Undefined global functions or variables: head Consider adding importFrom("utils", "head") to your NAMESPACE file. * checking Rd files ... [0s/0s] WARNING prepare_Rd: ./man/fit_nqr.Rd:27: unexpected section header '\value' prepare_Rd: ./man/fit_nqr.Rd:38: unexpected section header '\description' prepare_Rd: ./man/fit_nqr.Rd:45: unexpected END_OF_INPUT ' ' checkRd: (-1) fit_nqr.Rd:27-37: Lost braces 27 | \value{ | ^ checkRd: (-1) fit_nqr.Rd:38-44: Lost braces 38 | \description{ | ^ prepare_Rd: ./man/fit_qhl.Rd:29: unknown macro '\item' prepare_Rd: ./man/fit_qhl.Rd:31: unknown macro '\item' prepare_Rd: ./man/fit_qhl.Rd:33: unknown macro '\item' prepare_Rd: ./man/fit_qhl.Rd:38: unexpected section header '\value' prepare_Rd: ./man/fit_qhl.Rd:46: unexpected section header '\description' prepare_Rd: ./man/fit_qhl.Rd:56: unexpected section header '\seealso' prepare_Rd: ./man/fit_qhl.Rd:60: unexpected END_OF_INPUT ' ' checkRd: (-1) fit_qhl.Rd:29: Lost braces 29 | \item{tau_h}{Numeric heat stress threshold. Defaults to 68.} | ^ checkRd: (-1) fit_qhl.Rd:29: Lost braces 29 | \item{tau_h}{Numeric heat stress threshold. Defaults to 68.} | ^ checkRd: (-1) fit_qhl.Rd:31: Lost braces 31 | \item{tau_c}{Numeric cold stress threshold. Defaults to 10.} | ^ checkRd: (-1) fit_qhl.Rd:31: Lost braces 31 | \item{tau_c}{Numeric cold stress threshold. Defaults to 10.} | ^ checkRd: (-1) fit_qhl.Rd:33: Lost braces 33 | \item{start}{Named numeric vector of initial parameter values. The | ^ checkRd: (-1) fit_qhl.Rd:33-36: Lost braces 33 | \item{start}{Named numeric vector of initial parameter values. The | ^ checkRd: (-1) fit_qhl.Rd:38-45: Lost braces 38 | \value{ | ^ checkRd: (-1) fit_qhl.Rd:46-55: Lost braces 46 | \description{ | ^ checkRd: (-1) fit_qhl.Rd:56-59: Lost braces 56 | \seealso{ | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'fit_qhl.Rd' ‘tau_h’ ‘tau_c’ ‘start’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... NOTE Rd files without \description: ‘fit_nqr.Rd’ ‘fit_qhl.Rd’ * checking for unstated dependencies in examples ... OK * checking examples ... NONE * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [0s/0s] NOTE Found the following HTML validation problems: fit_nqr.html:86:1 (fit_nqr.Rd:44): Warning: missing before fit_qhl.html:101:1 (fit_qhl.Rd:59): Warning: missing before * checking for code which exercises the package ... WARNING No examples, no tests, no vignettes * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 4 WARNINGs, 4 NOTEs