* using log directory ‘/srv/hornik/tmp/CRAN_pretest/SMNlmec.Rcheck’
* using R Under development (unstable) (2024-11-21 r87360)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘SMNlmec/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SMNlmec’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Kelin Zhong <kelin.zhong@uconn.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  Fernanda (13:396)
  Kelin (13:383)
  Lachos (13:449)
  Schumacher (13:408)
  UNC (4:29)
  Zhong (13:389)
  correaltion (4:43)

Found the following (possibly) invalid DOIs:
  DOI: 10.1002/sim.10295
    From: DESCRIPTION
    Status: 404
    Message: Not Found

The Title field should be in title case. Current version is:
  ‘Scale mixture of normal distribution in linear mixed-effects censored model with UNC, DEC, CAR correaltion structure’
In title case that is:
  ‘Scale Mixture of Normal Distribution in Linear Mixed-Effects Censored Model with UNC, DEC, CAR Correaltion Structure’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SMNlmec’ can be installed ... [14s/14s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/2s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [16s/14s] NOTE
.Mat: no visible global function definition for ‘toeplitz’
.Mat: no visible global function definition for ‘ARMAacf’
.MatJ: no visible global function definition for ‘toeplitz’
.MatJ: no visible global function definition for ‘ARMAacf’
CovARp: no visible global function definition for ‘ARMAacf’
CovCS: no visible global function definition for ‘toeplitz’
Jt: no visible global function definition for ‘jacobian’
SMNlmec.est: no visible binding for global variable ‘tem’
SMNlmec.est: no visible binding for global variable ‘fit_stanCAR_N’
SMNlmecfit.creator: no visible global function definition for ‘new’
rsmsn.lmm: no visible global function definition for ‘rgamma’
rsmsn.lmm: no visible global function definition for ‘rbeta’
rsmsn.lmm: no visible global function definition for ‘runif’
rsmsn.lmm: no visible global function definition for ‘rnorm’
Undefined global functions or variables:
  ARMAacf fit_stanCAR_N jacobian new rbeta rgamma rnorm runif tem
  toeplitz
Consider adding
  importFrom("methods", "new")
  importFrom("stats", "ARMAacf", "rbeta", "rgamma", "rnorm", "runif",
             "toeplitz")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘SMNlmec.summary’ ‘SMNlmecfit.creator’
Undocumented S4 classes:
  ‘SMNlmecfit’
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [4s/4s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs