R Under development (unstable) (2025-01-13 r87564 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(SMARTTR)
> 
> test_check("SMARTTR")
There was existing data found for mouse 0

There was existing data found for mouse 0

Replaced existing mouse data!
There was existing data found for slice 1_1,  hemisphere

There was existing data found for slice 1_1,  hemisphere

Replaced existing slice data!
Imported the following files: 

[1] "M_C1_eYFP_733_1_4.txt"
[1] "Q_C1_eYFP_733_1_4_eYFP.txt"
Imported the following files: 

[1] "M_C2_cfos_733_1_4.txt"
[1] "Q_C2_cfos_733_1_4_cfos.txt"
Imported the following files: 

[1] "733_1_4_ColocOnlyTable.txt"
[1] "M_733_1_4_Coloc_A_C2.txt"
[1] "M_733_1_4_Coloc_B_C1.txt"
Imported the following files: 

[1] NA
[1] NA
Imported the following files: 

[1] "M_C1_eYFP_733_1_4.txt"
[1] "Q_C1_eYFP_733_1_4_eYFP.txt"
Imported the following files: 

[1] "M_C2_cfos_733_1_4.txt"
[1] "Q_C2_cfos_733_1_4_cfos.txt"
Imported the following files: 

[1] "733_1_4_ColocOnlyTable.txt"
[1] "M_733_1_4_Coloc_A_C2.txt"
[1] "M_733_1_4_Coloc_B_C1.txt"
Imported the following files: 

[1] NA
[1] NA
Imported the following files: 

[1] "M_C1_eYFP_733_1_4.txt"
[1] "Q_C1_eYFP_733_1_4_eYFP.txt"
Imported the following files: 

[1] "M_C2_cfos_733_1_4.txt"
[1] "Q_C2_cfos_733_1_4_cfos.txt"
Imported the following files: 

[1] "733_1_4_ColocOnlyTable.txt"
[1] "M_733_1_4_Coloc_A_C2.txt"
[1] "M_733_1_4_Coloc_B_C1.txt"
[1] "Importing testdata/slice/M_C1_eYFP_733_1_4.txt"
[1] "Importing testdata/slice/Q_C1_eYFP_733_1_4_eYFP.txt"
[1] "Importing testdata/slice/M_C1_eYFP_733_1_4.txt"
[1] "Importing testdata/slice/Q_C1_eYFP_733_1_4_eYFP.txt"
[1] "Importing testdata/slice/M_C1_eYFP_733_1_4.txt"
[1] "Importing testdata/slice/Q_C1_eYFP_733_1_4_eYFP.txt"
[1] "Importing testdata/slice/M_C1_eYFP_733_1_4.txt"
[1] "Importing testdata/slice/Q_C1_eYFP_733_1_4_eYFP.txt"
[1] "Importing testdata/slice/M_C1_eYFP_733_1_4.txt"
[1] "Importing testdata/slice/Q_C1_eYFP_733_1_4_eYFP.txt"
Imported the following files: 

[1] "M_C1_eYFP_733_1_4.txt"
[1] "Q_C1_eYFP_733_1_4_eYFP.txt"
Imported the following files: 

[1] "M_C2_cfos_733_1_4.txt"
[1] "Q_C2_cfos_733_1_4_cfos.txt"
Imported the following files: 

[1] "733_1_4_ColocOnlyTable.txt"
[1] "M_733_1_4_Coloc_A_C2.txt"
[1] "M_733_1_4_Coloc_B_C1.txt"
[ FAIL 0 | WARN 0 | SKIP 39 | PASS 24 ]

══ Skipped tests (39) ══════════════════════════════════════════════════════════
• On CRAN (37): 'test-analyze_null_networks.R:2:3',
  'test-combine_cell_counts.R:2:3', 'test-correlation_diff_permutation.R:2:3',
  'test-enough_mice_per_group.R:3:3', 'test-exclude_anatomy.R:4:3',
  'test-filter_exclude.R:4:3', 'test-filter_exclude.R:23:3',
  'test-find_outlier_counts.R:3:3', 'test-get_cell_table.R:4:3',
  'test-get_correlations.R:3:3', 'test-get_correlations.R:16:3',
  'test-get_percent_colabel.R:2:3', 'test-get_percent_colabel.R:15:3',
  'test-get_percent_colabel.R:26:3', 'test-import_external_datasets.R:3:3',
  'test-import_external_datasets.R:24:3', 'test-normalize_cell_counts.R:4:3',
  'test-normalize_colabel_counts.R:2:3', 'test-plotting_functions.R:2:3',
  'test-plotting_functions.R:33:3', 'test-plotting_functions.R:54:3',
  'test-plotting_functions.R:68:3', 'test-plotting_functions.R:86:3',
  'test-plotting_functions.R:106:3', 'test-plotting_functions.R:134:3',
  'test-plotting_functions.R:153:3', 'test-plotting_functions.R:169:3',
  'test-plotting_functions.R:185:3', 'test-plotting_functions.R:201:3',
  'test-plotting_functions.R:217:3', 'test-plotting_functions.R:243:3',
  'test-plotting_functions.R:269:3', 'test-simplify_by_keywords.R:52:5',
  'test-summarise_networks.R:2:3', 'test-test-creating_networks.R:2:3',
  'test-test-creating_networks.R:15:3', 'test-test-creating_networks.R:33:3'
• {wholebrain} is not installed (2): 'test-get_registered_volumes.R:3:3',
  'test-map_cells_to_atlas.R:3:3'

[ FAIL 0 | WARN 0 | SKIP 39 | PASS 24 ]
Deleting unused snapshots:
• get_percent_colabel/colabel_percentage_eyfp_individual.csv
> 
> proc.time()
   user  system elapsed 
   9.10    0.53    9.64