* using log directory ‘/srv/hornik/tmp/CRAN_pretest/SLOS.Rcheck’
* using R Under development (unstable) (2024-12-10 r87437)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘SLOS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SLOS’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Igor Peres <igor.peres@puc-rio.br>’

New submission

Possibly misspelled words in DESCRIPTION:
  Peres (7:158, 7:332, 7:535)
  SLOSR (7:588)
  SRU (7:645)
  al (7:167, 7:341, 7:544)
  et (7:164, 7:338, 7:541)
  multicentre (7:414)

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Igor",
                    family = "Peres",
                    role = c("aut", "cre"),
                    email = "igor.peres@puc-rio.br")
as necessary.

The Description field should not start with the package name,
  'This package' or similar.
The Description field contains
  information:https://github.com/igor-peres/ICU-Length-of-Stay-Prediction
Please enclose URLs in angle brackets (<...>).
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SLOS’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
License components which are templates and need '+ file LICENSE':
  MIT License
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘cran-comments.md’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  ‘MLmetrics’ ‘dplyr’ ‘ems’ ‘ggplot2’ ‘grid’ ‘httr’ ‘png’
'library' or 'require' calls in package code:
  ‘MLmetrics’ ‘dplyr’ ‘ems’ ‘ggplot2’ ‘grid’ ‘httr’ ‘png’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] NOTE
SLOS: no visible global function definition for ‘%>%’
SLOS: no visible global function definition for ‘mutate’
SLOS: no visible global function definition for ‘case_when’
SLOS: no visible global function definition for ‘bind_cols’
SLOS: no visible global function definition for ‘select’
SLOS: no visible binding for global variable ‘UnitCode’
SLOS: no visible global function definition for ‘group_by’
SLOS: no visible global function definition for ‘summarise’
SLOS: no visible global function definition for ‘n’
SLOS: no visible global function definition for ‘ungroup’
SLOS: no visible binding for global variable ‘soma_los_obs’
SLOS: no visible binding for global variable ‘soma_los_esp’
SLOS: no visible global function definition for ‘na.omit’
SLOS: no visible global function definition for ‘ggplot’
SLOS: no visible global function definition for ‘geom_point’
SLOS: no visible global function definition for ‘aes’
SLOS: no visible global function definition for ‘geom_smooth’
SLOS: no visible global function definition for ‘geom_abline’
SLOS: no visible global function definition for ‘labs’
SLOS: no visible global function definition for ‘theme_bw’
SLOS: no visible global function definition for ‘funnel’
SLOS: no visible global function definition for ‘png’
SLOS: no visible global function definition for ‘dev.off’
SLOS: no visible global function definition for ‘rasterGrob’
SLOS: no visible global function definition for ‘readPNG’
SLOS: no visible global function definition for ‘annotation_custom’
SLOS: no visible global function definition for ‘theme_void’
load_SLOSModel: no visible global function definition for ‘GET’
load_SLOSModel: no visible global function definition for ‘write_disk’
load_SLOSModel: no visible global function definition for ‘timeout’
load_SLOSModel: no visible global function definition for ‘status_code’
load_sampled_data: no visible global function definition for ‘data’
predict_and_evaluate: no visible global function definition for
  ‘predict’
predict_and_evaluate: no visible binding for global variable
  ‘small_model’
predict_and_evaluate: no visible global function definition for ‘RMSE’
predict_and_evaluate: no visible global function definition for ‘MAE’
predict_and_evaluate: no visible global function definition for
  ‘R2_Score’
Undefined global functions or variables:
  %>% GET MAE R2_Score RMSE UnitCode aes annotation_custom bind_cols
  case_when data dev.off funnel geom_abline geom_point geom_smooth
  ggplot group_by labs mutate n na.omit png predict rasterGrob readPNG
  select small_model soma_los_esp soma_los_obs status_code summarise
  theme_bw theme_void timeout ungroup write_disk
Consider adding
  importFrom("grDevices", "dev.off", "png")
  importFrom("stats", "na.omit", "predict")
  importFrom("utils", "data")
to your NAMESPACE file.

Found the following assignments to the global environment:
File ‘SLOS/R/02-Evaluation.R’:
  assign("df_unit_slos", df_unit_slos, envir = .GlobalEnv)

Found the following calls to data() loading into the global environment:
File ‘SLOS/R/01-Prediction.R’:
  data("SampledData")
See section ‘Good practice’ in ‘?data’.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [0s/0s] ERROR
  Running ‘testthat.R’ [0s/0s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(SLOSmodel)
  Error in library(SLOSmodel) : there is no package called 'SLOSmodel'
  Execution halted
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 4 NOTEs