* using log directory 'd:/RCompile/CRANincoming/R-devel/SIRmcmc.Rcheck'
* using R Under development (unstable) (2023-10-20 r85374 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'SIRmcmc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SIRmcmc' version '1.1.1'
* checking CRAN incoming feasibility ... [10s] Note_to_CRAN_maintainers
Maintainer: 'F Scott Dahlgren <fdahlgr@gmail.com>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SIRmcmc' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
plot:
  function(x, ...)
plot.chain:
  function(chain, burnin, thin, logL, accept)

plot:
  function(x, ...)
plot.SIRmcmc:
  function(SIRmcmc, burnin, thin, logL, accept)

sort:
  function(x, decreasing, ...)
sort.order.households:
  function(household.index)

summary:
  function(object, ...)
summary.SIRmcmc:
  function(SIRmcmc, burnin, thin)

summary:
  function(object, ...)
summary.chain:
  function(chain, burnin, thin)
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found if() conditions comparing class() to string:
File 'SIRmcmc/R/MCMC.functions.R': if (class(dates) == "character") ...
File 'SIRmcmc/R/MCMC.functions.R': if (class(try(loess(lambda[1:(K - 2)] ~ cut.points[1:(K - 2)]))) != "try-error") ...
File 'SIRmcmc/R/MCMC.functions.R': if (class(SIRmcmc) != "SIRmcmc") ...
File 'SIRmcmc/R/MCMC.functions.R': if (class(SIRmcmc) != "SIRmcmc") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs