* using log directory 'd:/RCompile/CRANincoming/R-devel/SIOSSAR.Rcheck'
* using R version 4.6.0 alpha (2026-03-30 r89742 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-03-31 12:21:23 UTC
* checking for file 'SIOSSAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SIOSSAR' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Jia Qing <jiaqing@hrbmu.edu.cn>'

New submission

Possibly misspelled words in DESCRIPTION:
  Hotspots (3:63)
  Transcriptomic (4:22)
  hotspots (14:69)
  transcriptomic (14:91)

Size of tarball: 10885562 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SIOSSAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [31s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [39s] ERROR
Error(s) in re-building vignettes:
--- re-building 'spatial_analysis_tutorial.Rmd' using rmarkdown

Quitting from spatial_analysis_tutorial.Rmd:136-148 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `SpatialPlot()`:
! Please run `UpdateSeuratObject` on your Seurat object first to ensure that data aligns to the image image when plotting.
---
Backtrace:
    ▆
 1. └─SIOSSAR::score_plot(data, "antigen_processing_and_presentation")
 2.   └─Seurat::SpatialFeaturePlot(...)
 3.     └─Seurat::SpatialPlot(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'spatial_analysis_tutorial.Rmd' failed with diagnostics:
Please run `UpdateSeuratObject` on your Seurat object first to ensure that data aligns to the image image when plotting.
--- failed re-building 'spatial_analysis_tutorial.Rmd'

SUMMARY: processing the following file failed:
  'spatial_analysis_tutorial.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE