* using log directory 'd:/RCompile/CRANincoming/R-devel/SIBER.Rcheck'
* using R Under development (unstable) (2026-02-04 r89376 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-02-05 10:20:30 UTC
* checking for file 'SIBER/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SIBER' version '2.1.10'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [12s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SIBER' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [338s] ERROR
Error(s) in re-building vignettes:
--- re-building 'Centroid-Vectors.Rmd' using rmarkdown
--- finished re-building 'Centroid-Vectors.Rmd'

--- re-building 'Customising-Plots-Manually.Rmd' using rmarkdown
--- finished re-building 'Customising-Plots-Manually.Rmd'

--- re-building 'Ellipse-Overlap.Rmd' using rmarkdown
--- finished re-building 'Ellipse-Overlap.Rmd'

--- re-building 'Introduction-to-SIBER.Rmd' using rmarkdown
--- finished re-building 'Introduction-to-SIBER.Rmd'

--- re-building 'Plot-SIA-ggplot2.Rmd' using rmarkdown
--- finished re-building 'Plot-SIA-ggplot2.Rmd'

--- re-building 'Plot-posterior-ellipses.Rmd' using rmarkdown
--- finished re-building 'Plot-posterior-ellipses.Rmd'

--- re-building 'Points-Inside-Outside-Ellipse.Rmd' using rmarkdown
--- finished re-building 'Points-Inside-Outside-Ellipse.Rmd'

--- re-building 'Test-convergence.Rmd' using rmarkdown
--- finished re-building 'Test-convergence.Rmd'

--- re-building 'kapow-example.Rmd' using rmarkdown

Quitting from kapow-example.Rmd:90-131 [make-packs]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/purrr_error_indexed>
Error in `purrr::map()`:
ℹ In index: 1.
ℹ With name: 11.
Caused by error:
! The `.dots` argument of `group_by()` was deprecated in dplyr 1.0.0 and
  is now defunct.
---
Backtrace:
     ▆
  1. ├─purrr::map(...)
  2. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
  3. │   ├─purrr:::with_indexed_errors(...)
  4. │   │ └─base::withCallingHandlers(...)
  5. │   ├─purrr:::call_with_cleanup(...)
  6. │   └─SIBER (local) .f(.x[[i]], ...)
  7. │     └─... %>% do(calcBoundaries(.data))
  8. ├─dplyr::do(., calcBoundaries(.data))
  9. ├─dplyr::group_by(., .dots = group)
 10. └─dplyr:::group_by.data.frame(., .dots = group)
 11.   └─dplyr::group_by_prepare(.data, ..., .add = .add, error_call = current_env())
 12.     └─lifecycle::deprecate_stop("1.0.0", "group_by(.dots = )")
 13.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'kapow-example.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: 11.
Caused by error:
! The `.dots` argument of `group_by()` was deprecated in dplyr 1.0.0 and
  is now defunct.
--- failed re-building 'kapow-example.Rmd'

--- re-building 'siber-comparing-communities.Rmd' using rmarkdown
--- finished re-building 'siber-comparing-communities.Rmd'

--- re-building 'siber-comparing-populations.Rmd' using rmarkdown
--- finished re-building 'siber-comparing-populations.Rmd'

SUMMARY: processing the following file failed:
  'kapow-example.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [28s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR