downloading reverse dependencies ... downloading CovTools_0.5.4.tar.gz ... ok installing dependencies ‘flare’, ‘SHT’ begin installing package ‘flare’ * installing *source* package ‘flare’ ... ** this is package ‘flare’ version ‘1.7.0.2’ ** package ‘flare’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvNBu1D/R.INSTALL12831f67704b7b/flare/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFGen.c -o SFGen.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euc_proj.c -o euc_proj.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mymath.c -o mymath.o mymath.c: In function ‘max_fabs_vc’: mymath.c:141:11: warning: variable ‘cnt’ set but not used [-Wunused-but-set-variable] 141 | int i,cnt; | ^~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr’: slim_dantzig_ladm_scr.c:262:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 262 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:261:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 261 | int j,k,m,ndata,dim,nlambda,ite1,ite2,ite,max_ite0,max_ite1,max_ite2,num_scr,num_scr1,num_scr2,num_scr1_tmp,num_scr2_tmp,flag,flag1,flag2; | ^~~~~ slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr2’: slim_dantzig_ladm_scr.c:411:21: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 411 | double T,T1,rho,zero,eps,eps1,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:410:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 410 | int j,k,m,ndata,dim,nlambda,ite1,ite,max_ite0,max_ite1,num_scr,num_scr1,num_scr1_tmp,flag,flag1; | ^~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lad_ladm_scr_btr.c -o slim_lad_ladm_scr_btr.o slim_lad_ladm_scr_btr.c: In function ‘slim_lad_ladm_scr_btr’: slim_lad_ladm_scr_btr.c:236:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 236 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lasso_ladm_scr.c -o slim_lasso_ladm_scr.o slim_lasso_ladm_scr.c: In function ‘lasso_ladm_scr’: slim_lasso_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT; | ^~~~ slim_lasso_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT; | ^~~~~ slim_lasso_ladm_scr.c: In function ‘slim_lasso_ladm_scr’: slim_lasso_ladm_scr.c:183:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 183 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_lq_ladm_scr_btr.c -o slim_lq_ladm_scr_btr.o slim_lq_ladm_scr_btr.c: In function ‘slim_lq_ladm_scr_btr’: slim_lq_ladm_scr_btr.c:242:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 242 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,nrholamb,qrtn; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_sqrt_ladm_scr.c -o slim_sqrt_ladm_scr.o slim_sqrt_ladm_scr.c: In function ‘sqrt_ladm_scr’: slim_sqrt_ladm_scr.c:12:92: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT; | ^~~~ slim_sqrt_ladm_scr.c:12:86: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,alp_dif,beta_dif,mu_dif,threshold,tmpd,alp_tild_sq,alp_th,ratio,epsT; | ^~~~~ slim_sqrt_ladm_scr.c: In function ‘slim_sqrt_ladm_scr’: slim_sqrt_ladm_scr.c:285:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 285 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slimh.c -o slimh.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_clime_ladm_scr.c -o sugm_clime_ladm_scr.o sugm_clime_ladm_scr.c: In function ‘sugm_clime_ladm_scr’: sugm_clime_ladm_scr.c:11:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 11 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sugm_tiger_ladm_scr.c -o sugm_tiger_ladm_scr.o sugm_tiger_ladm_scr.c: In function ‘tiger_lasso_ladm_scr’: sugm_tiger_ladm_scr.c:12:58: warning: variable ‘epsT’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp; | ^~~~ sugm_tiger_ladm_scr.c:12:52: warning: variable ‘ratio’ set but not used [-Wunused-but-set-variable] 12 | double gap_ext,max_dif,beta_dif,threshold,tmpd,ratio,epsT,tau0,tau1,tmp; | ^~~~~ sugm_tiger_ladm_scr.c: In function ‘sugm_tiger_ladm_scr’: sugm_tiger_ladm_scr.c:205:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 205 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda,sqrtn,nrholamb,tau0; | ^~~~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o flare.so SFGen.o euc_proj.o mymath.o registerDynamicSymbol.o slim_dantzig_ladm_scr.o slim_lad_ladm_scr_btr.o slim_lasso_ladm_scr.o slim_lq_ladm_scr_btr.o slim_sqrt_ladm_scr.o slimh.o sugm_clime_ladm_scr.o sugm_tiger_ladm_scr.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvNBu1D/R.INSTALL12831f67704b7b/flare/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-flare/00new/flare/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flare) begin installing package ‘SHT’ * installing *source* package ‘SHT’ ... ** this is package ‘SHT’ version ‘0.1.9’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmphzu9ry/R.INSTALL1283916dd85194/SHT/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov1_mxPBF.cpp -o cpp_cov1_mxPBF.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov2_2012LC.cpp -o cpp_cov2_2012LC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_cov2_mxPBF.cpp -o cpp_cov2_mxPBF.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_energy.cpp -o cpp_energy.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_eqdist_2014BG.cpp -o cpp_eqdist_2014BG.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_extras.cpp -o cpp_extras.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_mean2_2014CLX.cpp -o cpp_mean2_2014CLX.o cpp_mean2_2014CLX.cpp: In function ‘arma::mat adjust_clime(arma::mat)’: cpp_mean2_2014CLX.cpp:21:10: warning: variable ‘theval’ set but not used [-Wunused-but-set-variable] 21 | double theval = 0.0; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_mean2_mxPBF.cpp -o cpp_mean2_mxPBF.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_norm_1d_moments.cpp -o cpp_norm_1d_moments.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp_tester.cpp -o cpp_tester.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SHT.so RcppExports.o cpp_cov1_mxPBF.o cpp_cov2_2012LC.o cpp_cov2_mxPBF.o cpp_energy.o cpp_eqdist_2014BG.o cpp_extras.o cpp_mean2_2014CLX.o cpp_mean2_mxPBF.o cpp_norm_1d_moments.o cpp_tester.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmphzu9ry/R.INSTALL1283916dd85194/SHT/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SHT/00new/SHT/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SHT) checking SHT_0.1.9.tar.gz ... checking CovTools_0.5.4.tar.gz ... Depends: Package: SHT Imports: Rcpp, Rdpack, stats, utils, pracma, flare LinkingTo: Rcpp, RcppArmadillo Timings: user system elapsed SHT 99.58 8.122 110.161 Results: Check status summary: NOTE Source packages 1 Reverse depends 1 Check results summary: SHT ... NOTE * checking CRAN incoming feasibility ... [5s/7s] NOTE rdepends_CovTools ... NOTE * checking C++ specification ... NOTE