downloading reverse dependencies ‘convdistr’, ‘disbayes’, ‘DTEAssurance’, ‘expertsurv’, ‘survextrap’ trying URL 'file:///data/Repositories/CRAN/src/contrib/convdistr_1.6.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/disbayes_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DTEAssurance_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/expertsurv_1.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/survextrap_1.0.1.tar.gz' installing dependencies ‘dplyr’, ‘flexsurvcure’, ‘nph’, ‘nphRCT’, ‘rpact’, ‘SHELF’, ‘tempdisagg’ begin installing package ‘dplyr’ begin installing package ‘tempdisagg’ begin installing package ‘nphRCT’ begin installing package ‘nph’ begin installing package ‘rpact’ * installing *source* package ‘nphRCT’ ... ** this is package ‘nphRCT’ version ‘0.1.1’ ** package ‘nphRCT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nphRCT) * installing *source* package ‘tempdisagg’ ... ** this is package ‘tempdisagg’ version ‘1.2.0’ ** package ‘tempdisagg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tempdisagg) * installing *source* package ‘nph’ ... ** this is package ‘nph’ version ‘2.1’ ** package ‘nph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nph) * installing *source* package ‘dplyr’ ... ** this is package ‘dplyr’ version ‘1.2.1’ ** package ‘dplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplPMr8i/R.INSTALL2a522eb325f41/dplyr/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c chop.cpp -o chop.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c filter.cpp -o filter.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c funs.cpp -o funs.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c group_by.cpp -o group_by.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c group_data.cpp -o group_data.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c imports.cpp -o imports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mask.cpp -o mask.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mutate.cpp -o mutate.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c reconstruct.cpp -o reconstruct.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c slice.cpp -o slice.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summarise.cpp -o summarise.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o reconstruct.o slice.o summarise.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplPMr8i/R.INSTALL2a522eb325f41/dplyr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dplyr/00new/dplyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dplyr) begin installing package ‘flexsurvcure’ begin installing package ‘SHELF’ * installing *source* package ‘flexsurvcure’ ... ** this is package ‘flexsurvcure’ version ‘1.3.3’ ** package ‘flexsurvcure’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flexsurvcure) * installing *source* package ‘SHELF’ ... ** this is package ‘SHELF’ version ‘1.13.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SHELF) * installing *source* package ‘rpact’ ... ** this is package ‘rpact’ version ‘4.4.0’ ** package ‘rpact’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYvzJJQ/R.INSTALL2a522b2f3e23c8/rpact/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_as251.cpp -o f_as251.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_as251_fortran.f -o f_as251_fortran.o f_as251_fortran.f:565:72: 565 | ZEXP(Z) = EXP(Z) | 1 Warning: Obsolescent feature: Statement function at (1) f_as251_fortran.f:793:5: 793 | 30 IF (DLG .LE. EPS1) GO TO 50 | 1 Warning: Label 30 at (1) defined but not used [-Wunused-label] f_as251_fortran.f:192:72: 192 | ESTT(LVL) = ESTR | ^ Warning: ‘estr’ may be used uninitialized [-Wmaybe-uninitialized] f_as251_fortran.f:24:47: 24 | * FUNCN, WT, CONTRB, DLG, DX, DA, ESTL, ESTR, SUM, EXCESS, ERROR, | ^~~~ note: ‘estr’ was declared here f_as251_fortran.f:161:72: 161 | DLG = ABS(CONTRB - SUM) | ^ Warning: ‘contrb’ may be used uninitialized [-Wmaybe-uninitialized] f_as251_fortran.f:24:20: 24 | * FUNCN, WT, CONTRB, DLG, DX, DA, ESTL, ESTR, SUM, EXCESS, ERROR, | ^~~~~~ note: ‘contrb’ was declared here f_as251_fortran.f:247:72: 247 | BOUND = PART3 | ^ Warning: ‘part3’ may be used uninitialized [-Wmaybe-uninitialized] f_as251_fortran.f:23:46: 23 | * ERFAC, EL, EL1, BOUND, PART0, PART2, PART3, FUNC0, FUNC2, | ^~~~~ note: ‘part3’ was declared here g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_assertions.cpp -o f_assertions.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_count_data_estimation.cpp -o f_count_data_estimation.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_design_fisher_combination_test.cpp -o f_design_fisher_combination_test.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_design_group_sequential.cpp -o f_design_group_sequential.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_means.cpp -o f_simulation_base_means.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_rates.cpp -o f_simulation_base_rates.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_survival.cpp -o f_simulation_base_survival.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_survival_utilities.cpp -o f_simulation_survival_utilities.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_utilities.cpp -o f_utilities.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rpact.so RcppExports.o f_as251.o f_as251_fortran.o f_assertions.o f_count_data_estimation.o f_design_fisher_combination_test.o f_design_group_sequential.o f_simulation_base_means.o f_simulation_base_rates.o f_simulation_base_survival.o f_simulation_survival_utilities.o f_utilities.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYvzJJQ/R.INSTALL2a522b2f3e23c8/rpact/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rpact/00new/rpact/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpact) checking SHELF_1.13.0.tar.gz ... checking convdistr_1.6.3.tar.gz ... checking disbayes_1.1.0.tar.gz ... checking DTEAssurance_1.1.0.tar.gz ... checking expertsurv_1.4.1.tar.gz ... checking survextrap_1.0.1.tar.gz ... Depends: Package: SHELF Depends: R (>= 3.5.0) Imports: flexsurv, ggExtra, ggplot2, ggrepel, ggridges, graphics, grDevices, grid, Hmisc, rmarkdown, scales, shiny, shinyMatrix, sn, stats, survival, survminer, tidyr, utils Timings: user system elapsed SHELF 100.243 8.225 109.743 Results: Check status summary: OK Source packages 1 Reverse depends 5 Check results summary: SHELF ... OK rdepends_convdistr ... OK rdepends_disbayes ... OK rdepends_DTEAssurance ... OK rdepends_expertsurv ... OK rdepends_survextrap ... OK