if(base::isFALSE(dep_check[["do_ViolinPlot"]])){ testthat::test_that("do_ViolinPlot: CRAN essentials", { p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", order = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - one variable", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", plot.grid = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", plot.grid = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - split.by", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", split.by = "annotation", plot_boxplot = FALSE, order = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - xlab and ylab", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", xlab = "Hi", ylab = "Hi") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - flip", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - two variable", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = c("EPC1", "TOX2"), plot.grid = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = c("EPC1", "TOX2"), plot.grid = TRUE, share.y.lims = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = c("EPC1", "TOX2"), plot.grid = TRUE, xlab = c("A", "A"), ylab = c("B", "B"), y_cut = c(400, 400)) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = c("EPC1", "TOX2"), plot.grid = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - group.by", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", plot.grid = TRUE, group.by = "seurat_clusters") testthat::expect_true(ggplot2::is_ggplot(p)) sample$seurat_clusters <- as.character(sample$seurat_clusters) p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", plot.grid = FALSE, group.by = "seurat_clusters") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - without boxplot", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", plot_boxplot = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - rotate axis", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", axis.text.x.angle = 45) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - plot.grid", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", plot.grid = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - one features ycut", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", axis.text.x.angle = 45, y_cut = 2) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - one features line width", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", axis.text.x.angle = 45, y_cut = 2, line_width = 3) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - one features boxplot width", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", axis.text.x.angle = 45, y_cut = 2, boxplot_width = 0.1) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - change colors", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", axis.text.x.angle = 45, y_cut = 2, boxplot_width = 0.1, colors.use = c("0" = "#001219", "1" = "#005f73", "2" = "#0a9396", "3" = "#94d2bd", "4" = "#e9d8a6", "5" = "#ee9b00", "6" = "#ca6702", "7" = "#bb3e03", "8" = "#ae2012")) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: FAIL - split.by", { testthat::skip_on_cran() testthat::expect_error(SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", split.by = "orig.ident", order = FALSE)) }) testthat::test_that("do_ViolinPlot: PASS - one variable, group by", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", group.by = "orig.ident") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", split.by = "orig.ident", group.by = "annotation", plot_boxplot = FALSE, order = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", split.by = "seurat_clusters", plot_boxplot = FALSE, order = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - one variable, xlab y lab", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", xlab = "y", ylab = "x") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = c("EPC1", "TOX2"), xlab = c("A", "B"), ylab = c("C", "D")) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_ViolinPlot(sample = sample, features = c("EPC1", "TOX2"), xlab = c(NA, "B"), ylab = c("C", NA)) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - one variable, plot.title, subtitle and caption", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", plot.title = "A", plot.subtitle = "B", plot.caption = "C") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: PASS - multiple variables plot.title, subtitle and caption", { testthat::skip_on_cran() p <- SCpubr::do_ViolinPlot(sample = sample, "EPC1", group.by = "orig.ident", colors.use = c("Cell" = "red")) testthat::expect_true(ggplot2::is_ggplot(p)) sample$orig.ident <- factor(sample$orig.ident) p <- SCpubr::do_ViolinPlot(sample = sample, "EPC1", group.by = "orig.ident", colors.use = c("Cell" = "red")) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_ViolinPlot: FAIL - wrong font.type", { testthat::skip_on_cran() testthat::expect_error(SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", font.type = "wrong")) }) testthat::test_that("do_ViolinPlot: FAIL - split.by with boxplots", { testthat::skip_on_cran() testthat::expect_error(SCpubr::do_ViolinPlot(sample = sample, features = "EPC1", split.by = "annotation", order = FALSE)) }) }