if (base::isFALSE(dep_check[["do_SCEnrichmentHeatmap"]])){ testthat::test_that("do_SCEnrichmentHeatmap: CRAN essentials", { genes <- list("A" = rownames(sample)[1:5], "B" = rownames(sample)[6:10], "C" = rownames(sample)[11:15]) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", assay = "SCT", nbin = 1, ctrl = 5) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_SCEnrichmentHeatmap: PASS - default", { testthat::skip_on_cran() genes <- list("A" = rownames(sample)[1:5], "B" = rownames(sample)[6:10], "C" = rownames(sample)[11:15]) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", assay = "SCT", nbin = 1, ctrl = 5, cluster = FALSE, features.order = c("B", "C", "A")) testthat::expect_true(ggplot2::is_ggplot(p)) genes <- list("A_A" = rownames(sample)[1:5], "B_A" = rownames(sample)[6:10], "C_A" = rownames(sample)[11:15]) suppressWarnings({testthat::expect_warning({p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", assay = "SCT", slot = "data", nbin = 1, ctrl = 5)})}) testthat::expect_true(ggplot2::is_ggplot(p)) genes <- list("A" = rownames(sample)[1:5], "B" = rownames(sample)[6:10], "C" = rownames(sample)[11:15]) testthat::expect_error({p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = "EPC1", flavor = "Seurat", assay = "SCT", nbin = 1, ctrl = 5)}) sample$test <- as.factor(sample$seurat_clusters) genes <- list("A" = rownames(sample)[1:5]) testthat::expect_warning({p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", assay = "SCT", slot = "data", nbin = 1, ctrl = 5)}) testthat::expect_true(ggplot2::is_ggplot(p)) testthat::expect_warning({p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "UCell", assay = "SCT", nbin = 1, ctrl = 5)}) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident")) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident"), min.cutoff = 0, max.cutoff = 0.5) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident"), min.cutoff = 0, max.cutoff = 0.5, use_viridis = TRUE, viridis.direction = 1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident"), min.cutoff = 0, max.cutoff = 0.5, use_viridis = TRUE, viridis.direction = -1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident"), min.cutoff = 0, max.cutoff = 0.5, use_viridis = FALSE, sequential.direction = 1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident"), min.cutoff = 0, max.cutoff = 0.5, use_viridis = FALSE, sequential.direction = -1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident"), min.cutoff = 0, max.cutoff = 0.5, enforce_symmetry = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, metadata = c("seurat_clusters", "orig.ident"), min.cutoff = 0, max.cutoff = 0.5, enforce_symmetry = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_SCEnrichmentHeatmap(sample = sample, input_gene_list = genes, flavor = "Seurat", nbin = 1, ctrl = 5, return_object = TRUE) testthat::expect_type(p, "list") }) }