if(base::isFALSE(dep_check[["do_GroupwiseDEHeatmap"]])){ testthat::test_that("do_GroupwiseDEHeatmap: CRAN essentials", { suppressWarnings({ sample <- SeuratObject::SetAssayData(object = sample, assay = "SCT", slot = "scale.data", new.data = as.matrix(SeuratObject::GetAssayData(object = sample, assay = "SCT", slot = "data"))) }) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes_scaled, assay = "SCT", slot = "scale.data") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_GroupwiseDEHeatmap: PASS - default", { testthat::skip_on_cran() suppressWarnings({ sample <- SeuratObject::SetAssayData(object = sample, assay = "SCT", slot = "scale.data", new.data = as.matrix(SeuratObject::GetAssayData(object = sample, assay = "SCT", slot = "data"))) }) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = FALSE, sequential.direction = 1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = FALSE, sequential.direction = 1, enforce_symmetry = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = FALSE, sequential.direction = 1, enforce_symmetry = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = FALSE, sequential.direction = -1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = FALSE, sequential.direction = -1, flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = FALSE, sequential.direction = -1, flip = FALSE, legend.title = "Test") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = TRUE, viridis.direction = 1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", use_viridis = TRUE, viridis.direction = -1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes_scaled, assay = "SCT", slot = "scale.data") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes_scaled, assay = "SCT", slot = "scale.data", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes_scaled, assay = "SCT", slot = "scale.data", flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", viridis.direction = 1, max.cutoff = 1.2, min.cutoff = 1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", viridis.direction = 1, min.cutoff = 1) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", viridis.direction = 1, max.cutoff = 1.2) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_GroupwiseDEHeatmap: PASS - heatmap legend side", { testthat::skip_on_cran() suppressWarnings({ sample <- SeuratObject::SetAssayData(object = sample, assay = "SCT", slot = "scale.data", new.data = as.matrix(SeuratObject::GetAssayData(object = sample, assay = "SCT", slot = "data"))) }) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", legend.position = "right") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes_scaled, assay = "SCT", slot = "scale.data", legend.position = "right") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_GroupwiseDEHeatmap: FAIL - wrong direction", { testthat::skip_on_cran() testthat::expect_error({SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", viridis.direction = 0)}) }) testthat::test_that("do_ExpressionHeatmap: FAIL", { testthat::skip_on_cran() testthat::expect_error({SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", viridis.direction = 1, min.cutoff = -10)}) testthat::expect_error({SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", viridis.direction = 1, max.cutoff = 200)}) testthat::expect_error({SCpubr::do_GroupwiseDEHeatmap(sample = sample, de_genes = de_genes, assay = "SCT", slot = "data", viridis.direction = 1, max.cutoff = 1, min.cutoff = 2)}) }) }