if (base::isFALSE(dep_check[["do_BarPlot"]])){ testthat::test_that("do_BarPlot: CRAN essential tests", { sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", position = "stack") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", position = "stack", colors.use = NULL) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", position = "stack", order = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", position = "stack") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", position = "fill") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = NULL, position = "stack") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = NULL, position = "stack", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", position = "fill", add.n = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", position = "fill", order = TRUE, order.by = "0") testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", position = "fill", add.n = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", facet.by = "orig.ident", position = "fill", add.n = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", facet.by = "orig.ident", position = "fill", add.n = TRUE, return_data = TRUE) testthat::expect_type(p, "list") p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", facet.by = "orig.ident", position = "fill", add.n = TRUE, return_data = TRUE, flip = TRUE) testthat::expect_type(p, "list") }) testthat::test_that("do_BarPlot: PASS - one variable - stack", { testthat::skip_on_cran() p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", position = "stack") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - two variables - fill - flip", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", position = "fill", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - two variables - stack - flip", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "orig.ident", position = "stack", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - two variables - stack - flip - ordered", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "orig.ident", split.by = "seurat_clusters", position = "stack", flip = TRUE, order = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: FAIL - wrong position", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") testthat::expect_error(SCpubr::do_BarPlot(sample = sample, group.by = "orig.ident", position = "wrong")) }) testthat::test_that("do_BarPlot: FAIL - wrong font.type", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") testthat::expect_error(SCpubr::do_BarPlot(sample = sample, group.by = "orig.ident", font.type = "wrong")) }) testthat::test_that("do_BarPlot: FAIL - column not a factor or character", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") testthat::expect_error(SCpubr::do_BarPlot(sample = sample, group.by = "nCount_RNA")) }) testthat::test_that("do_BarPlot: PASS - rotate x labels", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "orig.ident", axis.text.x.angle = 0) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - rotate x labels", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") sample$seurat.clusters.factor <- factor(sample$seurat_clusters) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat.clusters.factor") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - rotate x labels with group.by", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") sample$seurat.clusters.factor <- factor(sample$seurat_clusters) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat.clusters.factor", split.by = "seurat_clusters") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - colors.use and group.by", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") sample$seurat.clusters.factor <- factor(sample$seurat_clusters) colors <- c("0" = "#001219", "1" = "#005f73", "2" = "#0a9396", "3" = "#94d2bd", "4" = "#e9d8a6", "5" = "#ee9b00", "6" = "#ca6702", "7" = "#bb3e03", "8" = "#ae2012") p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat.clusters.factor", split.by = "seurat_clusters", colors.use = colors) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat.clusters.factor", split.by = "seurat_clusters", colors.use = NULL) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - colors.use ", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") sample$seurat.clusters.factor <- factor(sample$seurat_clusters) colors <- c("0" = "#001219", "1" = "#005f73", "2" = "#0a9396", "3" = "#94d2bd", "4" = "#e9d8a6", "5" = "#ee9b00", "6" = "#ca6702", "7" = "#bb3e03", "8" = "#ae2012") p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat.clusters.factor", colors.use = colors) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - one variable - rotate x labels", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "orig.ident", position = "stack", axis.text.x.angle = 0) testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - one variable - xlab, ylab and title", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "orig.ident", position = "stack", xlab = "A", ylab = "B", plot.title = "C", plot.subtitle = "D", plot.caption = "E") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - one variable - no legend", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") p <- SCpubr::do_BarPlot(sample = sample, group.by = "orig.ident", position = "stack", legend.position = "none") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - group.by factor", { testthat::skip_on_cran() sample$orig.ident <- ifelse(sample$seurat_clusters %in% c("1", "2"), "A", "B") sample$factor_seurat_clusters <- factor(sample$seurat_clusters) p <- SCpubr::do_BarPlot(sample = sample, group.by = "seurat_clusters", split.by = "factor_seurat_clusters", position = "stack", legend.position = "none") testthat::expect_true(ggplot2::is_ggplot(p)) }) testthat::test_that("do_BarPlot: PASS - labs", { testthat::skip_on_cran() p <- SCpubr::do_BarPlot(sample = sample, xlab = NULL, ylab = NULL, group.by = "seurat_clusters", split.by = NULL, flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = NULL, ylab = NULL, group.by = "seurat_clusters", split.by = "orig.ident", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = NULL, ylab = NULL, group.by = "seurat_clusters", split.by = NULL, flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = "A", ylab = "B", group.by = "seurat_clusters", split.by = "orig.ident", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = NULL, ylab = NULL, group.by = "seurat_clusters", split.by = NULL, flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = NULL, ylab = NULL, group.by = "seurat_clusters", split.by = "orig.ident", flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = NULL, ylab = NULL, group.by = "seurat_clusters", split.by = NULL, flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = "A", ylab = "B", group.by = "seurat_clusters", split.by = "orig.ident", flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = "A", ylab = "B", legend.title = NULL, position = "fill", group.by = "seurat_clusters", split.by = "orig.ident", flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = "A", ylab = "B", legend.title = NULL, group.by = "seurat_clusters", split.by = "orig.ident", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = "A", ylab = "B", legend.title = "C", group.by = "seurat_clusters", split.by = "orig.ident", flip = FALSE) testthat::expect_true(ggplot2::is_ggplot(p)) p <- SCpubr::do_BarPlot(sample = sample, xlab = "A", ylab = "B", legend.title = "C", group.by = "seurat_clusters", split.by = "orig.ident", flip = TRUE) testthat::expect_true(ggplot2::is_ggplot(p)) }) }