* using log directory 'd:/RCompile/CRANincoming/R-devel/SCdeconR.Rcheck'
* using R Under development (unstable) (2024-02-19 r85946 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'SCdeconR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SCdeconR' version '1.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] NOTE
Maintainer: 'Yuanhang Liu <liu.yuanhang@mayo.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  Deconvolution (3:8)
  deconvolution (7:40)

Suggests or Enhances not in mainstream repositories:
  MuSiC, SCDC, spacexr, xbioc

Found the following (possibly) invalid URLs:
  URL: http://www.gsea-msigdb.org/gsea/downloads.jsp (moved to https://www.gsea-msigdb.org:443/gsea/downloads.jsp)
    From: inst/doc/Cell_type_deconvolution_and_differential_analysis.html
    Status: 301
    Message: Moved Permanently
  URL: https://cran.r-project.org/web/packages/FARDEEP/index.html
    From: man/scdecon.Rd
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/MASS/index.html
    From: man/scdecon.Rd
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/nnls/index.html
    From: man/scdecon.Rd
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://mojaveazure.github.io/seurat-object/reference/AssayData.html
    From: inst/doc/Deconvolution_with_scaden_for_spatial_transcriptomics_data.html
    Status: 404
    Message: Not Found
  URL: https://mojaveazure.github.io/seurat-object/reference/CreateAssayObject.html
    From: inst/doc/Deconvolution_with_scaden_for_spatial_transcriptomics_data.html
    Status: 404
    Message: Not Found
  URL: https://mojaveazure.github.io/seurat-object/reference/DefaultAssay.html
    From: inst/doc/Deconvolution_with_scaden_for_spatial_transcriptomics_data.html
    Status: 404
    Message: Not Found
  URL: https://satijalab.org/seurat/reference/InstallData.html
    From: inst/doc/Deconvolution_with_scaden_for_spatial_transcriptomics_data.html
    Status: 404
    Message: Not Found
  URL: https://satijalab.org/seurat/reference/LoadData.html
    From: inst/doc/Deconvolution_with_scaden_for_spatial_transcriptomics_data.html
    Status: 404
    Message: Not Found
  The canonical URL of the CRAN page for a package is 
    https://CRAN.R-project.org/package=pkgname
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.

The Title field should be in title case. Current version is:
'Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference'
In title case that is:
'Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq Data as Reference'

Size of tarball: 33854303 bytes
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages suggested but not available for checking:
  'MuSiC', 'SCDC', 'spacexr', 'xbioc'

Namespace dependency missing from DESCRIPTION Imports/Depends entries: 'reshape2'

Depends: includes the non-default packages:
  'dplyr', 'edgeR', 'foreach', 'ggplot2', 'glmGamPoi', 'Seurat'
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
* DONE
Status: 1 ERROR, 1 NOTE