* using log directory ‘/srv/hornik/tmp/CRAN/SCCS.Rcheck’
* using R Under development (unstable) (2024-03-21 r86166)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘SCCS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SCCS’ version ‘1.7’
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘"Yonas Ghebremichael Weldeselassie" <yonas.weldeselassie@open.ac.uk>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Boca (15:35)
  CRC (15:62)
  Farrington (13:9)
  Ghebremichael (13:43)
  Raton (15:40)
  Weldeselassie (13:57)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-03-01 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘SCCS’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
summary:
  function(object, ...)
summary.smoothagesccs:
  function(object, conf.int)

summary:
  function(object, ...)
summary.nonparasccs:
  function(object, conf.int)

summary:
  function(object, ...)
summary.sccs:
  function(mod, sandwich, ses, ncases, nevents)

summary:
  function(object, ...)
summary.smoothexposccs:
  function(object, conf.int)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/15s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [2s/2s] ERROR
Running examples in ‘SCCS-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: eventdepenexp
> ### Title: SCCS with event-dependent exposure
> ### Aliases: eventdepenexp
> ### Keywords: Event dependent exposures
> 
> ### ** Examples
> 
> library(SCCS)
> 
> # Analysis of rotavirus vaccination and intussusception data
> # Model 1: Three doses of the same vaccine exposure OPV (OPV, OPV2 and opv3), 
> # only one risk period [adrug, aedrug]
> 
> 
>    rot.mod1 <- eventdepenexp(indiv=case, astart=sta, aend=end,
+                          aevent=intus, adrug=cbind(rv,rvd2), 
+                          expogrp=1,aedrug=cbind(rv+21,rvd2+21), 
+                          agegrp=seq(56,168,14), dataformat="multi", data=rotdat)
Warning in is.R() : 'is.R' is deprecated.
See help("Deprecated") and help("base-deprecated").
Error in is.R() : deprecation turned into an error
Calls: eventdepenexp -> summary.sccs -> is.R
Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs