* using log directory 'd:/RCompile/CRANincoming/R-devel/Rtwobitlib.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86435 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'Rtwobitlib/DESCRIPTION' ... OK * this is package 'Rtwobitlib' version '0.3.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Hervé Pagès ' New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'Rtwobitlib' can be installed ... WARNING Found the following significant warnings: common.h:169:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.h:271:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.h:274:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.h:391:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.h:400:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.h:416:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.h:628:38: warning: function declaration isn't a prototype [-Wstrict-prototypes] errAbort.h:28:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] errAbort.h:31:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] portable.h:28:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.c:342:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.c:385:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.c:415:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.c:1065:31: warning: function declaration isn't a prototype [-Wstrict-prototypes] common.c:1085:38: warning: function declaration isn't a prototype [-Wstrict-prototypes] localmem.h:37:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] localmem.c:104:14: warning: function declaration isn't a prototype [-Wstrict-prototypes] localmem.c:173:23: warning: pointer of type 'void *' used in arithmetic [-Wpointer-arith] verbose.h:19:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] verbose.h:22:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] verbose.h:37:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] verbose.c:43:9: warning: function declaration isn't a prototype [-Wstrict-prototypes] verbose.c:68:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] verbose.c:100:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] portimpl.h:19:5: warning: function declaration isn't a prototype [-Wstrict-prototypes] osunix.c:27:7: warning: function declaration isn't a prototype [-Wstrict-prototypes] dlist.h:43:8: warning: function declaration isn't a prototype [-Wstrict-prototypes] dlist.c:17:16: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.h:22:8: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.h:25:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.h:31:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.h:35:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.c:19:15: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.c:68:20: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.c:79:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.c:314:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] memalloc.c:334:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] errAbort.c:34:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] hash.h:271:30: warning: function declaration isn't a prototype [-Wstrict-prototypes] hash.c:555:15: warning: pointer of type 'void *' used in subtraction [-Wpointer-arith] hash.c:708:30: warning: function declaration isn't a prototype [-Wstrict-prototypes] bits.h:104:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] bits.c:18:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] cheapcgi.c:55:27: warning: format '%x' expects argument of type 'unsigned int *', but argument 3 has type 'int *' [-Wformat=] dnautil.h:21:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] dnautil.c:134:13: warning: function declaration isn't a prototype [-Wstrict-prototypes] dnautil.c:356:13: warning: function declaration isn't a prototype [-Wstrict-prototypes] dnautil.c:376:13: warning: function declaration isn't a prototype [-Wstrict-prototypes] dnautil.c:404:13: warning: function declaration isn't a prototype [-Wstrict-prototypes] dnautil.c:832:13: warning: function declaration isn't a prototype [-Wstrict-prototypes] dnautil.c:1018:13: warning: function declaration isn't a prototype [-Wstrict-prototypes] dnautil.c:1037:6: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/common.h:169:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/common.h:271:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/common.h:274:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/common.h:391:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/common.h:400:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/common.h:416:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/common.h:628:38: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/hash.h:271:30: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/dnautil.h:21:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/localmem.h:37:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] d:/RCompile/CRANincoming/R-devel/lib/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent/bits.h:104:1: warning: function declaration isn't a prototype [-Wstrict-prototypes] See 'd:/RCompile/CRANincoming/R-devel/Rtwobitlib.Rcheck/00install.out' for details. * used C compiler: 'gcc.exe (GCC) 13.2.0' * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard files/directories found at top level: 'INSTALL.UNUSED' 'LICENSE.md' 'NOTES.txt' 'configure.ac.UNUSED' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK Running 'testthat.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [27s] OK * checking HTML version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs