error when output_format is 'fasta', and fastqout is defined

error when output_format is 'fastq', and fastaout is defined

error when fastq_input has incorrect columns if input is tibble

error when reverse has incorrect columns if input is tibble

fastq_input and reverse can be joined when files, and results written to fastq file

fastq_input and reverse can be joined when files, and results written to fasta file

fastq_input and reverse can be joined when files, and results given as fastq tibble

fastq_input and reverse can be joined when files, and results given as fasta tibble

fastq_input and reverse can be joined when tibbles, and results written to fastq file

fastq_input and reverse can be joined when tibbles, and results given as tibble

fastq_input and reverse can be joined when files, and results given as fastq tibble with vsearch_options

join fastq sequences from a pe_df data frame

"Invalid output_format. Choose from fasta or fastq.")
test_that("fastq_input and reverse can be merged when files, and results written to fastq file", {
return_value <- vs_fastq_mergepairs(fastq_input = fastq_input,
test_that("fastq_input and reverse can be merged when files, and results written to fasta file", {
test_that("fastq_input and reverse can be merged when files, and results given as fastq tibble", {
merged <- vs_fastq_mergepairs(fastq_input = fastq_input,
test_that("fastq_input and reverse can be merged when files, and results given as fasta tibble", {
test_that("fastq_input and reverse can be merged when tibbles, and results written to fastq file", {
test_that("fastq_input and reverse can be merged when tibbles, and results given as tibble", {
test_that("fastq_input and reverse can be merged when files, and results given as fastq tibble with vsearch_options", {
test_that("merge read pairs from a pe_df data frame", {
test_that("error when no reverse reads provided and fastq_input is not pe_df", {
test_that("error when output file is empty and no reads were merged", {
empty_fastq <- withr::local_tempfile(fileext = ".fastq")
"Output file is empty. No reads were merged."