context("(4) Diagnostics functions") skip_on_cran() # the plotting functions are imported from BayesTools and tested henceforth # test objects - assuming that the fit function worked properly saved_files <- paste0("fit_", 1:4, ".RDS") saved_fits <- list() for(i in seq_along(saved_files)){ saved_fits[[i]] <- readRDS(file = file.path("../results/fits", saved_files[i])) } test_that("Parameter plots work", { p1 <- diagnostics(saved_fits[[1]], parameter = "mu", type = "trace") p2 <- diagnostics(saved_fits[[1]], parameter = "sigma", type = "autocorelation") p3 <- diagnostics(saved_fits[[1]], parameter = "delta", type = "density") p4 <- diagnostics(saved_fits[[1]], parameter = "rho", type = "trace") p5 <- diagnostics(saved_fits[[1]], parameter = "nu", type = "autocorelation") # ggplot for(i in 1:8){ expect_doppelganger(paste0("diagnostics_mu_",i), p1[[i]]) expect_doppelganger(paste0("diagnostics_sigma_",i), p2[[i]]) if(i %in% 1:4){ expect_null(p3[[i]]) }else{ expect_doppelganger(paste0("diagnostics_delta_",i), p3[[i]]) } if(i %in% c(1,2,5,6)){ expect_null(p4[[i]]) }else{ expect_doppelganger(paste0("diagnostics_rho_",i), p4[[i]]) } if(i %in% c(1,3,5,7)){ expect_null(p5[[i]]) }else{ expect_doppelganger(paste0("diagnostics_nu_",i), p5[[i]]) } } })