* using log directory ‘/srv/hornik/tmp/CRAN/RiskMap.Rcheck’
* using R Under development (unstable) (2024-06-20 r86796)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘RiskMap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RiskMap’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Emanuele Giorgi <e.giorgi@lancaster.ac.uk>’

New submission

Possibly misspelled words in DESCRIPTION:
  Geostatistical (3:8)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RiskMap’ can be installed ... [14s/14s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/23s] NOTE
glgpm: no visible global function definition for ‘st_crs<-’
glgpm: no visible binding for global variable ‘sigma2_re’
glgpm_nong: no visible binding for global variable ‘start_pars’
glgpm_sim: no visible global function definition for ‘st_crs<-’
glgpm_sim: no visible global function definition for ‘steop’
plot.RiskMap_pred_target_shp: no visible binding for global variable
  ‘object’
plot.RiskMap_pred_target_shp: no visible binding for global variable
  ‘.data’
plot_s_variogram: no visible binding for global variable ‘mid_points’
plot_s_variogram: no visible binding for global variable ‘obs_vari’
pred_over_grid: no visible binding for global variable ‘control_mcmc’
Undefined global functions or variables:
  .data control_mcmc mid_points object obs_vari sigma2_re st_crs<-
  start_pars steop

Found if() conditions comparing class() to string:
File ‘RiskMap/R/parameter_estimation.R’: if (class(formula) != "formula") ...
File ‘RiskMap/R/parameter_estimation.R’: if (class(control_mcmc) != "mcmc.RiskMap") ...
File ‘RiskMap/R/parameter_estimation.R’: if (class(model_fit) != "RiskMap") ...
File ‘RiskMap/R/parameter_estimation.R’: if (class(formula) != "formula") ...
File ‘RiskMap/R/spatial_prediction.R’: if (class(control_mcmc) != "mcmc.RiskMap") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  to_table.Rd: xtable
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [6s/6s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs