* using log directory ‘/srv/hornik/tmp/CRAN/RevSD.Rcheck’ * using R Under development (unstable) (2024-02-08 r85876) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘RevSD/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RevSD’ version ‘0.1.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/2s] NOTE Maintainer: ‘Hieu Nguyen ’ New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘RevSD’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING 'library' or 'require' calls not declared from: ‘shiny’ ‘shinydashboard’ 'library' or 'require' calls in package code: ‘shiny’ ‘shinydashboard’ Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [337s/374s] ERROR Running examples in ‘RevSD-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: revsd > ### Title: Visualizing the Standard Deviation via Revolution > ### Aliases: revsd > > ### ** Examples > > revsd(c(10,18,23,30,36), shouldLaunch = FALSE) Loading required package: shiny Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘shiny’ Loading required package: shinydashboard Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘shinydashboard’ Installing package into ‘/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637’ (as ‘lib’ is unspecified) trying URL 'http://cran.us.r-project.org/src/contrib/plotrix_3.8-4.tar.gz' Content type 'application/x-gzip' length 318991 bytes (311 KB) ================================================== downloaded 311 KB * installing *source* package ‘plotrix’ ... ** package ‘plotrix’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotrix) The downloaded source packages are in ‘/tmp/Rtmp3bHNBC/working_dir/RtmpBqDnPQ/downloaded_packages’ Installing package into ‘/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637’ (as ‘lib’ is unspecified) also installing the dependencies ‘cli’, ‘magrittr’, ‘Rcpp’, ‘BH’, ‘base64enc’, ‘cachem’, ‘jquerylib’, ‘lifecycle’, ‘memoise’, ‘mime’, ‘fs’, ‘R6’, ‘rappdirs’, ‘httpuv’, ‘xtable’, ‘fontawesome’, ‘sourcetools’, ‘later’, ‘promises’, ‘crayon’, ‘fastmap’, ‘withr’, ‘commonmark’, ‘glue’, ‘ellipsis’, ‘digest’, ‘anytime’, ‘bslib’, ‘sass’, ‘shiny’, ‘htmltools’, ‘jsonlite’, ‘rlang’ trying URL 'http://cran.us.r-project.org/src/contrib/cli_3.6.2.tar.gz' Content type 'application/x-gzip' length 569771 bytes (556 KB) ================================================== downloaded 556 KB trying URL 'http://cran.us.r-project.org/src/contrib/magrittr_2.0.3.tar.gz' Content type 'application/x-gzip' length 267074 bytes (260 KB) ================================================== downloaded 260 KB trying URL 'http://cran.us.r-project.org/src/contrib/Rcpp_1.0.12.tar.gz' Content type 'application/x-gzip' length 3430494 bytes (3.3 MB) ================================================== downloaded 3.3 MB trying URL 'http://cran.us.r-project.org/src/contrib/BH_1.84.0-0.tar.gz' Content type 'application/x-gzip' length 14017751 bytes (13.4 MB) ================================================== downloaded 13.4 MB trying URL 'http://cran.us.r-project.org/src/contrib/base64enc_0.1-3.tar.gz' Content type 'application/x-gzip' length 7833 bytes ================================================== downloaded 7833 bytes trying URL 'http://cran.us.r-project.org/src/contrib/cachem_1.0.8.tar.gz' Content type 'application/x-gzip' length 26510 bytes (25 KB) ================================================== downloaded 25 KB trying URL 'http://cran.us.r-project.org/src/contrib/jquerylib_0.1.4.tar.gz' Content type 'application/x-gzip' length 520207 bytes (508 KB) ================================================== downloaded 508 KB trying URL 'http://cran.us.r-project.org/src/contrib/lifecycle_1.0.4.tar.gz' Content type 'application/x-gzip' length 107656 bytes (105 KB) ================================================== downloaded 105 KB trying URL 'http://cran.us.r-project.org/src/contrib/memoise_2.0.1.tar.gz' Content type 'application/x-gzip' length 17852 bytes (17 KB) ================================================== downloaded 17 KB trying URL 'http://cran.us.r-project.org/src/contrib/mime_0.12.tar.gz' Content type 'application/x-gzip' length 12562 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'http://cran.us.r-project.org/src/contrib/fs_1.6.3.tar.gz' Content type 'application/x-gzip' length 1185603 bytes (1.1 MB) ================================================== downloaded 1.1 MB trying URL 'http://cran.us.r-project.org/src/contrib/R6_2.5.1.tar.gz' Content type 'application/x-gzip' length 63422 bytes (61 KB) ================================================== downloaded 61 KB trying URL 'http://cran.us.r-project.org/src/contrib/rappdirs_0.3.3.tar.gz' Content type 'application/x-gzip' length 12288 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'http://cran.us.r-project.org/src/contrib/httpuv_1.6.14.tar.gz' Content type 'application/x-gzip' length 1880639 bytes (1.8 MB) ================================================== downloaded 1.8 MB trying URL 'http://cran.us.r-project.org/src/contrib/xtable_1.8-4.tar.gz' Content type 'application/x-gzip' length 564589 bytes (551 KB) ================================================== downloaded 551 KB trying URL 'http://cran.us.r-project.org/src/contrib/fontawesome_0.5.2.tar.gz' Content type 'application/x-gzip' length 1281884 bytes (1.2 MB) ================================================== downloaded 1.2 MB trying URL 'http://cran.us.r-project.org/src/contrib/sourcetools_0.1.7-1.tar.gz' Content type 'application/x-gzip' length 24095 bytes (23 KB) ================================================== downloaded 23 KB trying URL 'http://cran.us.r-project.org/src/contrib/later_1.3.2.tar.gz' Content type 'application/x-gzip' length 63597 bytes (62 KB) ================================================== downloaded 62 KB trying URL 'http://cran.us.r-project.org/src/contrib/promises_1.2.1.tar.gz' Content type 'application/x-gzip' length 3151071 bytes (3.0 MB) ================================================== downloaded 3.0 MB trying URL 'http://cran.us.r-project.org/src/contrib/crayon_1.5.2.tar.gz' Content type 'application/x-gzip' length 40567 bytes (39 KB) ================================================== downloaded 39 KB trying URL 'http://cran.us.r-project.org/src/contrib/fastmap_1.1.1.tar.gz' Content type 'application/x-gzip' length 46412 bytes (45 KB) ================================================== downloaded 45 KB trying URL 'http://cran.us.r-project.org/src/contrib/withr_3.0.0.tar.gz' Content type 'application/x-gzip' length 107677 bytes (105 KB) ================================================== downloaded 105 KB trying URL 'http://cran.us.r-project.org/src/contrib/commonmark_1.9.1.tar.gz' Content type 'application/x-gzip' length 145978 bytes (142 KB) ================================================== downloaded 142 KB trying URL 'http://cran.us.r-project.org/src/contrib/glue_1.7.0.tar.gz' Content type 'application/x-gzip' length 105420 bytes (102 KB) ================================================== downloaded 102 KB trying URL 'http://cran.us.r-project.org/src/contrib/ellipsis_0.3.2.tar.gz' Content type 'application/x-gzip' length 8066 bytes ================================================== downloaded 8066 bytes trying URL 'http://cran.us.r-project.org/src/contrib/digest_0.6.34.tar.gz' Content type 'application/x-gzip' length 178159 bytes (173 KB) ================================================== downloaded 173 KB trying URL 'http://cran.us.r-project.org/src/contrib/anytime_0.3.9.tar.gz' Content type 'application/x-gzip' length 348903 bytes (340 KB) ================================================== downloaded 340 KB trying URL 'http://cran.us.r-project.org/src/contrib/bslib_0.6.1.tar.gz' Content type 'application/x-gzip' length 6059587 bytes (5.8 MB) ================================================== downloaded 5.8 MB trying URL 'http://cran.us.r-project.org/src/contrib/sass_0.4.8.tar.gz' Content type 'application/x-gzip' length 3025474 bytes (2.9 MB) ================================================== downloaded 2.9 MB trying URL 'http://cran.us.r-project.org/src/contrib/shiny_1.8.0.tar.gz' Content type 'application/x-gzip' length 2826485 bytes (2.7 MB) ================================================== downloaded 2.7 MB trying URL 'http://cran.us.r-project.org/src/contrib/htmltools_0.5.7.tar.gz' Content type 'application/x-gzip' length 134681 bytes (131 KB) ================================================== downloaded 131 KB trying URL 'http://cran.us.r-project.org/src/contrib/jsonlite_1.8.8.tar.gz' Content type 'application/x-gzip' length 1053028 bytes (1.0 MB) ================================================== downloaded 1.0 MB trying URL 'http://cran.us.r-project.org/src/contrib/rlang_1.1.3.tar.gz' Content type 'application/x-gzip' length 763765 bytes (745 KB) ================================================== downloaded 745 KB trying URL 'http://cran.us.r-project.org/src/contrib/shinyWidgets_0.8.1.tar.gz' Content type 'application/x-gzip' length 793347 bytes (774 KB) ================================================== downloaded 774 KB * installing *source* package ‘cli’ ... ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c ansi.c -o ansi.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c inst.c -o inst.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-unix.c -o keypress-unix.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-win.c -o keypress-win.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress.c -o keypress.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress-altrep.c -o progress-altrep.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress.c -o progress.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c thread.c -o thread.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c tty.c -o tty.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vt.c -o vt.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse.c -o vtparse.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse_table.c -o vtparse_table.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c win-utf8.c -o win-utf8.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c winfiles.c -o winfiles.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) * installing *source* package ‘magrittr’ ... ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pipe.c -o pipe.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.cpp -o api.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.cpp -o attributes.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c barrier.cpp -o barrier.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c date.cpp -o date.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c module.cpp -o module.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_init.cpp -o rcpp_init.o clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) * installing *source* package ‘BH’ ... ** package ‘BH’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BH) * installing *source* package ‘base64enc’ ... ** package ‘base64enc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uriencode.c -o uriencode.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o base64enc.so base64.o uriencode.o utf8.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-base64enc/00new/base64enc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (base64enc) * installing *source* package ‘mime’ ... ** package ‘mime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rawmatch.c -o rawmatch.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o mime.so init.o rawmatch.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-mime/00new/mime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mime) * installing *source* package ‘fs’ ... ** package ‘fs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dir.cc -o dir.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error.cc -o error.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file.cc -o file.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fs.cc -o fs.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c getmode.cc -o getmode.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c id.cc -o id.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cc -o init.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c link.cc -o link.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c path.cc -o path.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.cc -o utils.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/getmode.cc -o unix/getmode.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/setmode.c -o bsd/setmode.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/strmode.c -o bsd/strmode.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/reallocarray.c -o bsd/reallocarray.o (cd libuv-1.44.2 \ && CC="clang-17 " CPPFLAGS="-I/usr/local/include" CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -std=c99" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure --quiet) make --directory=libuv-1.44.2 \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/Rtmp3bHNBC/working_dir/Rtmpw9Wdhs/R.INSTALLcc6ce5019ecb0/fs/src/libuv-1.44.2' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/libuv_la-strtok.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[1]: Leaving directory '/tmp/Rtmp3bHNBC/working_dir/Rtmpw9Wdhs/R.INSTALLcc6ce5019ecb0/fs/src/libuv-1.44.2' clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o fs.so dir.o error.o file.o fs.o getmode.o id.o init.o link.o path.o utils.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.44.2/.libs/libuv.a -pthread -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-fs/00new/fs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fs) * installing *source* package ‘R6’ ... ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) * installing *source* package ‘rappdirs’ ... ** package ‘rappdirs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c win-path.c -o win-path.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o rappdirs.so init.o win-path.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-rappdirs/00new/rappdirs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rappdirs) * installing *source* package ‘xtable’ ... ** package ‘xtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) * installing *source* package ‘sourcetools’ ... ** package ‘sourcetools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Reader.cpp -o Reader.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Tokenizer.cpp -o Tokenizer.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sourcetools-init.c -o sourcetools-init.o clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-sourcetools/00new/sourcetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sourcetools) * installing *source* package ‘crayon’ ... ** package ‘crayon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crayon) * installing *source* package ‘fastmap’ ... ** package ‘fastmap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O3 -Wall -pedantic -c fastmap.cpp -o fastmap.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o fastmap.so fastmap.o init.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-fastmap/00new/fastmap/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastmap) * installing *source* package ‘withr’ ... ** package ‘withr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) * installing *source* package ‘commonmark’ ... ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions.c -o extensions.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrapper.c -o wrapper.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark.c -o cmark/cmark.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/node.c -o cmark/node.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/iterator.c -o cmark/iterator.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/blocks.c -o cmark/blocks.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/inlines.c -o cmark/inlines.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/scanners.c -o cmark/scanners.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/utf8.c -o cmark/utf8.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/buffer.c -o cmark/buffer.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/references.c -o cmark/references.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/render.c -o cmark/render.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/man.c -o cmark/man.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/xml.c -o cmark/xml.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/html.c -o cmark/html.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/commonmark.c -o cmark/commonmark.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/latex.c -o cmark/latex.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/arena.c -o cmark/arena.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/linked_list.c -o cmark/linked_list.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plugin.c -o cmark/plugin.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/registry.c -o cmark/registry.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/syntax_extension.c -o cmark/syntax_extension.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plaintext.c -o cmark/plaintext.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/footnotes.c -o cmark/footnotes.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/map.c -o cmark/map.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/autolink.c -o extensions/autolink.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/core-extensions.c -o extensions/core-extensions.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/ext_scanners.c -o extensions/ext_scanners.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/strikethrough.c -o extensions/strikethrough.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/table.c -o extensions/table.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tagfilter.c -o extensions/tagfilter.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tasklist.c -o extensions/tasklist.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) * installing *source* package ‘glue’ ... ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trim.c -o trim.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SpookyV2.cpp -o SpookyV2.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3.c -o blake3.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_dispatch.c -o blake3_dispatch.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_portable.c -o blake3_portable.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32.c -o crc32.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32c.cpp -o crc32c.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32c_portable.cpp -o crc32c_portable.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest.c -o digest.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest2int.c -o digest2int.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pmurhash.c -o pmurhash.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raes.c -o raes.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha2.c -o sha2.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spooky_serialize.cpp -o spooky_serialize.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xxhash.c -o xxhash.o clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) * installing *source* package ‘jsonlite’ ... ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_array.c -o collapse_array.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_object.c -o collapse_object.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_pretty.c -o collapse_pretty.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape_chars.c -o escape_chars.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c integer64_to_na.c -o integer64_to_na.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_datelist.c -o is_datelist.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_recordlist.c -o is_recordlist.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_scalarlist.c -o is_scalarlist.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c modp_numtoa.c -o modp_numtoa.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c null_to_na.c -o null_to_na.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c num_to_char.c -o num_to_char.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c parse.c -o parse.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c prettify.c -o prettify.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c push_parser.c -o push_parser.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c r-base64.c -o r-base64.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c register.c -o register.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c row_collapse.c -o row_collapse.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose_list.c -o transpose_list.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c validate.c -o validate.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl.c -o yajl/yajl.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_buf.c -o yajl/yajl_buf.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_encode.c -o yajl/yajl_encode.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_gen.c -o yajl/yajl_gen.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_lex.c -o yajl/yajl_lex.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_parser.c -o yajl/yajl_parser.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) * installing *source* package ‘rlang’ ... ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c capture.c -o capture.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c internal.c -o internal.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) * installing *source* package ‘cachem’ ... ** package ‘cachem’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cache.c -o cache.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o cachem.so cache.o init.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-cachem/00new/cachem/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cachem) * installing *source* package ‘lifecycle’ ... ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) * installing *source* package ‘later’ ... ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c callback_registry.cpp -o callback_registry.o In file included from callback_registry.cpp:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c debug.cpp -o debug.o debug.cpp:31:11: warning: variable 'res' set but not used [-Wunused-but-set-variable] 31 | ssize_t res = write(STDERR_FILENO, buf, n); | ^ 1 warning generated. clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later.cpp -o later.o In file included from later.cpp:1: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_posix.cpp -o later_posix.o In file included from later_posix.cpp:9: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_win32.cpp -o later_win32.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timer_posix.cpp -o timer_posix.o In file included from timer_posix.cpp:6: In file included from ./timer_posix.h:8: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_unix.cpp -o timestamp_unix.o In file included from timestamp_unix.cpp:5: In file included from ./timeconv.h:9: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_win32.cpp -o timestamp_win32.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o -pthread -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) * installing *source* package ‘ellipsis’ ... ** package ‘ellipsis’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dots.c -o dots.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o ellipsis.so dots.o init.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-ellipsis/00new/ellipsis/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ellipsis) * installing *source* package ‘anytime’ ... ** package ‘anytime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 17.0.6 (5)’ using C++11 clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-17 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c anytime.cpp -o anytime.o clang++-17 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o anytime.so RcppExports.o anytime.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-anytime/00new/anytime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anytime) * installing *source* package ‘memoise’ ... ** package ‘memoise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memoise) * installing *source* package ‘promises’ ... ** package ‘promises’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c promise_task.cpp -o promise_task.o clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) * installing *source* package ‘htmltools’ ... ** package ‘htmltools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c template.c -o template.o clang-17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o htmltools.so init.o template.o -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-htmltools/00new/htmltools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmltools) * installing *source* package ‘jquerylib’ ... ** package ‘jquerylib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jquerylib) * installing *source* package ‘httpuv’ ... ** package ‘httpuv’ successfully unpacked and MD5 sums checked ** using staged installation ** Using libuv found by pkg-config in /usr ** PKG_CFLAGS= ** PKG_LIBS=-luv -lpthread -ldl -lrt ** libs using C compiler: ‘Debian clang version 17.0.6 (5)’ using C++ compiler: ‘Debian clang version 17.0.6 (5)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callback.cpp -o callback.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callbackqueue.cpp -o callbackqueue.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-unix.cpp -o filedatasource-unix.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-win.cpp -o filedatasource-win.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c fs.cpp -o fs.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c gzipdatasource.cpp -o gzipdatasource.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http.cpp -o http.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httprequest.cpp -o httprequest.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpresponse.cpp -o httpresponse.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpuv.cpp -o httpuv.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c mime.cpp -o mime.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c socket.cpp -o socket.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c staticpath.cpp -o staticpath.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c thread.cpp -o thread.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c timegm.cpp -o timegm.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c uvutil.cpp -o uvutil.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c webapplication.cpp -o webapplication.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-base.cpp -o websockets-base.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hixie76.cpp -o websockets-hixie76.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hybi03.cpp -o websockets-hybi03.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-ietf.cpp -o websockets-ietf.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets.cpp -o websockets.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c winutils.cpp -o winutils.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -pthread -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/later/include' -I'/tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c base64/base64.cpp -o base64/base64.o clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o httpuv.so RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o -luv -lpthread -ldl -lrt ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R-d-clang-17/lib -lR installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) * installing *source* package ‘fontawesome’ ... ** package ‘fontawesome’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontawesome) * installing *source* package ‘sass’ ... ** package ‘sass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /home/hornik/tmp/R-d-clang-17/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' using C compiler: ‘Debian clang version 17.0.6 (5)’ using C++ compiler: ‘Debian clang version 17.0.6 (5)’ /home/hornik/tmp/R-d-clang-17/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' clang-17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compile.c -o compile.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o MAKEFLAGS= CC="clang-17 " CFLAGS="-g -O3 -Wall -pedantic" CXX="clang++-17 -std=gnu++17" AR="ar" LDFLAGS="-Wl,-O1" make -C libsass make[1]: Entering directory '/tmp/Rtmp3bHNBC/working_dir/Rtmpnvi8Sr/R.INSTALLce0755f8f6a0/sass/src/libsass' clang-17 -g -O3 -Wall -pedantic -O2 -I ./include -fPIC -c -o src/cencode.o src/cencode.c clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast.o src/ast.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_values.o src/ast_values.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_supports.o src/ast_supports.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_cmp.o src/ast_sel_cmp.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_unify.o src/ast_sel_unify.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_super.o src/ast_sel_super.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_weave.o src/ast_sel_weave.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_selectors.o src/ast_selectors.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/context.o src/context.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/constants.o src/constants.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_utils.o src/fn_utils.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_miscs.o src/fn_miscs.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_maps.o src/fn_maps.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_lists.o src/fn_lists.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_colors.o src/fn_colors.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_numbers.o src/fn_numbers.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_strings.o src/fn_strings.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_selectors.o src/fn_selectors.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/color_maps.o src/color_maps.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/environment.o src/environment.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_fwd_decl.o src/ast_fwd_decl.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/bind.o src/bind.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/file.o src/file.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util.o src/util.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util_string.o src/util_string.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/json.o src/json.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/units.o src/units.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/values.o src/values.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/plugins.o src/plugins.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source.o src/source.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/position.o src/position.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/lexer.o src/lexer.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser.o src/parser.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser_selectors.o src/parser_selectors.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/prelexer.o src/prelexer.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval.o src/eval.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval_selectors.o src/eval_selectors.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/expand.o src/expand.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/listize.o src/listize.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/cssize.o src/cssize.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extender.o src/extender.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extension.o src/extension.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/stylesheet.o src/stylesheet.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/output.o src/output.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/inspect.o src/inspect.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/emitter.o src/emitter.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/check_nesting.o src/check_nesting.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/remove_placeholders.o src/remove_placeholders.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass.o src/sass.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_values.o src/sass_values.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_context.o src/sass_context.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_functions.o src/sass_functions.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass2scss.o src/sass2scss.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/backtrace.o src/backtrace.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/operators.o src/operators.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast2c.o src/ast2c.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/c2ast.o src/c2ast.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/to_value.o src/to_value.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source_map.o src/source_map.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/error_handling.o src/error_handling.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/allocator.o src/memory/allocator.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/shared_ptr.o src/memory/shared_ptr.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/utf8_string.o src/utf8_string.cpp clang++-17 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/base64vlq.o src/base64vlq.cpp mkdir lib ar rcvs lib/libsass.a src/cencode.o src/ast.o src/ast_values.o src/ast_supports.o src/ast_sel_cmp.o src/ast_sel_unify.o src/ast_sel_super.o src/ast_sel_weave.o src/ast_selectors.o src/context.o src/constants.o src/fn_utils.o src/fn_miscs.o src/fn_maps.o src/fn_lists.o src/fn_colors.o src/fn_numbers.o src/fn_strings.o src/fn_selectors.o src/color_maps.o src/environment.o src/ast_fwd_decl.o src/bind.o src/file.o src/util.o src/util_string.o src/json.o src/units.o src/values.o src/plugins.o src/source.o src/position.o src/lexer.o src/parser.o src/parser_selectors.o src/prelexer.o src/eval.o src/eval_selectors.o src/expand.o src/listize.o src/cssize.o src/extender.o src/extension.o src/stylesheet.o src/output.o src/inspect.o src/emitter.o src/check_nesting.o src/remove_placeholders.o src/sass.o src/sass_values.o src/sass_context.o src/sass_functions.o src/sass2scss.o src/backtrace.o src/operators.o src/ast2c.o src/c2ast.o src/to_value.o src/source_map.o src/error_handling.o src/memory/allocator.o src/memory/shared_ptr.o src/utf8_string.o src/base64vlq.o a - src/cencode.o a - src/ast.o a - src/ast_values.o a - src/ast_supports.o a - src/ast_sel_cmp.o a - src/ast_sel_unify.o a - src/ast_sel_super.o a - src/ast_sel_weave.o a - src/ast_selectors.o a - src/context.o a - src/constants.o a - src/fn_utils.o a - src/fn_miscs.o a - src/fn_maps.o a - src/fn_lists.o a - src/fn_colors.o a - src/fn_numbers.o a - src/fn_strings.o a - src/fn_selectors.o a - src/color_maps.o a - src/environment.o a - src/ast_fwd_decl.o a - src/bind.o a - src/file.o a - src/util.o a - src/util_string.o a - src/json.o a - src/units.o a - src/values.o a - src/plugins.o a - src/source.o a - src/position.o a - src/lexer.o a - src/parser.o a - src/parser_selectors.o a - src/prelexer.o a - src/eval.o a - src/eval_selectors.o a - src/expand.o a - src/listize.o a - src/cssize.o a - src/extender.o a - src/extension.o a - src/stylesheet.o a - src/output.o a - src/inspect.o a - src/emitter.o a - src/check_nesting.o a - src/remove_placeholders.o a - src/sass.o a - src/sass_values.o a - src/sass_context.o a - src/sass_functions.o a - src/sass2scss.o a - src/backtrace.o a - src/operators.o a - src/ast2c.o a - src/c2ast.o a - src/to_value.o a - src/source_map.o a - src/error_handling.o a - src/memory/allocator.o a - src/memory/shared_ptr.o a - src/utf8_string.o a - src/base64vlq.o make[1]: Leaving directory '/tmp/Rtmp3bHNBC/working_dir/Rtmpnvi8Sr/R.INSTALLce0755f8f6a0/sass/src/libsass' clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-17/lib -Wl,-O1 -o sass.so compile.o init.o ./libsass/lib/libsass.a -L/home/hornik/tmp/R-d-clang-17/lib -lR /home/hornik/tmp/R-d-clang-17/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' installing to /tmp/Rtmp3bHNBC/RLIBS_cc24734adb637/00LOCK-sass/00new/sass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sass) * installing *source* package ‘bslib’ ... ** package ‘bslib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bslib) * installing *source* package ‘shiny’ ... ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) * installing *source* package ‘shinyWidgets’ ... ** package ‘shinyWidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyWidgets) The downloaded source packages are in ‘/tmp/Rtmp3bHNBC/working_dir/RtmpBqDnPQ/downloaded_packages’ Error in dashboardPage(skin = "yellow", dashboardHeader(title = "RMSD from ECDF"), : could not find function "dashboardPage" Calls: revsd Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 1 NOTE