* using log directory 'd:/RCompile/CRANincoming/R-devel/RevSD.Rcheck' * using R Under development (unstable) (2024-02-08 r85876 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'RevSD/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RevSD' version '0.1.1' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Hieu Nguyen ' New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'RevSD' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from Rd file 'revsd.Rd': revsd Code: function(data, shouldRun) Docs: function(data) Argument names in code not in docs: shouldRun * checking Rd \usage sections ... WARNING Documented arguments not in \usage in Rd file 'revsd.Rd': 'shouldRun' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [67s] ERROR Running examples in 'RevSD-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: revsd > ### Title: Visualizing the Standard Deviation via Revolution > ### Aliases: revsd > > ### ** Examples > > revsd(c(10,18,23,30,36)) Installing package into 'D:/temp/RtmpqAl6mp/RLIBS_1849865047b39' (as 'lib' is unspecified) also installing the dependencies 'fs', 'rappdirs', 'Rcpp', 'base64enc', 'digest', 'magrittr', 'jquerylib', 'memoise', 'sass', 'cli', 'httpuv', 'mime', 'jsonlite', 'xtable', 'fontawesome', 'htmltools', 'R6', 'sourcetools', 'later', 'promises', 'crayon', 'rlang', 'fastmap', 'withr', 'commonmark', 'glue', 'bslib', 'cachem', 'ellipsis', 'lifecycle' trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/fs_1.6.3.zip' Content type 'application/zip' length 392653 bytes (383 KB) ================================================== downloaded 383 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/rappdirs_0.3.3.zip' Content type 'application/zip' length 51757 bytes (50 KB) ================================================== downloaded 50 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/Rcpp_1.0.12.zip' Content type 'application/zip' length 2880124 bytes (2.7 MB) ================================================== downloaded 2.7 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/base64enc_0.1-3.zip' Content type 'application/zip' length 32723 bytes (31 KB) ================================================== downloaded 31 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/digest_0.6.34.zip' Content type 'application/zip' length 206387 bytes (201 KB) ================================================== downloaded 201 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/magrittr_2.0.3.zip' Content type 'application/zip' length 226352 bytes (221 KB) ================================================== downloaded 221 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/jquerylib_0.1.4.zip' Content type 'application/zip' length 525993 bytes (513 KB) ================================================== downloaded 513 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/memoise_2.0.1.zip' Content type 'application/zip' length 50758 bytes (49 KB) ================================================== downloaded 49 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/sass_0.4.8.zip' Content type 'application/zip' length 2608455 bytes (2.5 MB) ================================================== downloaded 2.5 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/cli_3.6.2.zip' Content type 'application/zip' length 1343323 bytes (1.3 MB) ================================================== downloaded 1.3 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/httpuv_1.6.14.zip' Content type 'application/zip' length 1043133 bytes (1018 KB) ================================================== downloaded 1018 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/mime_0.12.zip' Content type 'application/zip' length 40930 bytes (39 KB) ================================================== downloaded 39 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/jsonlite_1.8.8.zip' Content type 'application/zip' length 1106291 bytes (1.1 MB) ================================================== downloaded 1.1 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/xtable_1.8-4.zip' Content type 'application/zip' length 706243 bytes (689 KB) ================================================== downloaded 689 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/fontawesome_0.5.2.zip' Content type 'application/zip' length 1358391 bytes (1.3 MB) ================================================== downloaded 1.3 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/htmltools_0.5.7.zip' Content type 'application/zip' length 360301 bytes (351 KB) ================================================== downloaded 351 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/R6_2.5.1.zip' Content type 'application/zip' length 84474 bytes (82 KB) ================================================== downloaded 82 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/sourcetools_0.1.7-1.zip' Content type 'application/zip' length 384097 bytes (375 KB) ================================================== downloaded 375 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/later_1.3.2.zip' Content type 'application/zip' length 465332 bytes (454 KB) ================================================== downloaded 454 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/promises_1.2.1.zip' Content type 'application/zip' length 2014954 bytes (1.9 MB) ================================================== downloaded 1.9 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/crayon_1.5.2.zip' Content type 'application/zip' length 163075 bytes (159 KB) ================================================== downloaded 159 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/rlang_1.1.3.zip' Content type 'application/zip' length 1584871 bytes (1.5 MB) ================================================== downloaded 1.5 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/fastmap_1.1.1.zip' Content type 'application/zip' length 133150 bytes (130 KB) ================================================== downloaded 130 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/withr_3.0.0.zip' Content type 'application/zip' length 247433 bytes (241 KB) ================================================== downloaded 241 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/commonmark_1.9.1.zip' Content type 'application/zip' length 142603 bytes (139 KB) ================================================== downloaded 139 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/glue_1.7.0.zip' Content type 'application/zip' length 161265 bytes (157 KB) ================================================== downloaded 157 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/bslib_0.6.1.zip' Content type 'application/zip' length 6485034 bytes (6.2 MB) ================================================== downloaded 6.2 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/cachem_1.0.8.zip' Content type 'application/zip' length 72854 bytes (71 KB) ================================================== downloaded 71 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/ellipsis_0.3.2.zip' Content type 'application/zip' length 40953 bytes (39 KB) ================================================== downloaded 39 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/lifecycle_1.0.4.zip' Content type 'application/zip' length 139330 bytes (136 KB) ================================================== downloaded 136 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/shiny_1.8.0.zip' Content type 'application/zip' length 4529978 bytes (4.3 MB) ================================================== downloaded 4.3 MB package 'fs' successfully unpacked and MD5 sums checked package 'rappdirs' successfully unpacked and MD5 sums checked package 'Rcpp' successfully unpacked and MD5 sums checked package 'base64enc' successfully unpacked and MD5 sums checked package 'digest' successfully unpacked and MD5 sums checked package 'magrittr' successfully unpacked and MD5 sums checked package 'jquerylib' successfully unpacked and MD5 sums checked package 'memoise' successfully unpacked and MD5 sums checked package 'sass' successfully unpacked and MD5 sums checked package 'cli' successfully unpacked and MD5 sums checked package 'httpuv' successfully unpacked and MD5 sums checked package 'mime' successfully unpacked and MD5 sums checked package 'jsonlite' successfully unpacked and MD5 sums checked package 'xtable' successfully unpacked and MD5 sums checked package 'fontawesome' successfully unpacked and MD5 sums checked package 'htmltools' successfully unpacked and MD5 sums checked package 'R6' successfully unpacked and MD5 sums checked package 'sourcetools' successfully unpacked and MD5 sums checked package 'later' successfully unpacked and MD5 sums checked package 'promises' successfully unpacked and MD5 sums checked package 'crayon' successfully unpacked and MD5 sums checked package 'rlang' successfully unpacked and MD5 sums checked package 'fastmap' successfully unpacked and MD5 sums checked package 'withr' successfully unpacked and MD5 sums checked package 'commonmark' successfully unpacked and MD5 sums checked package 'glue' successfully unpacked and MD5 sums checked package 'bslib' successfully unpacked and MD5 sums checked package 'cachem' successfully unpacked and MD5 sums checked package 'ellipsis' successfully unpacked and MD5 sums checked package 'lifecycle' successfully unpacked and MD5 sums checked package 'shiny' successfully unpacked and MD5 sums checked The downloaded binary packages are in D:\temp\Rtmp0SJRFr\downloaded_packages Installing package into 'D:/temp/RtmpqAl6mp/RLIBS_1849865047b39' (as 'lib' is unspecified) trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/shinydashboard_0.7.2.zip' Content type 'application/zip' length 333489 bytes (325 KB) ================================================== downloaded 325 KB package 'shinydashboard' successfully unpacked and MD5 sums checked The downloaded binary packages are in D:\temp\Rtmp0SJRFr\downloaded_packages Installing package into 'D:/temp/RtmpqAl6mp/RLIBS_1849865047b39' (as 'lib' is unspecified) trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/plotrix_3.8-4.zip' Content type 'application/zip' length 1142052 bytes (1.1 MB) ================================================== downloaded 1.1 MB package 'plotrix' successfully unpacked and MD5 sums checked The downloaded binary packages are in D:\temp\Rtmp0SJRFr\downloaded_packages Installing package into 'D:/temp/RtmpqAl6mp/RLIBS_1849865047b39' (as 'lib' is unspecified) also installing the dependencies 'BH', 'anytime' trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/BH_1.84.0-0.zip' Content type 'application/zip' length 21468576 bytes (20.5 MB) ================================================== downloaded 20.5 MB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/anytime_0.3.9.zip' Content type 'application/zip' length 741984 bytes (724 KB) ================================================== downloaded 724 KB trying URL 'http://cran.us.r-project.org/bin/windows/contrib/4.4/shinyWidgets_0.8.1.zip' Content type 'application/zip' length 1473832 bytes (1.4 MB) ================================================== downloaded 1.4 MB package 'BH' successfully unpacked and MD5 sums checked package 'anytime' successfully unpacked and MD5 sums checked package 'shinyWidgets' successfully unpacked and MD5 sums checked The downloaded binary packages are in D:\temp\Rtmp0SJRFr\downloaded_packages Error in dashboardPage(skin = "yellow", dashboardHeader(title = "RMSD from ECDF"), : could not find function "dashboardPage" Calls: revsd Execution halted * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 2 WARNINGs, 1 NOTE