* using log directory ‘/srv/hornik/tmp/CRAN/RevSD.Rcheck’ * using R Under development (unstable) (2023-09-15 r85153) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (13) GNU Fortran (Debian 13.2.0-3) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘RevSD/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RevSD’ version ‘0.1.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/2s] NOTE Maintainer: ‘Hieu Nguyen ’ New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘RevSD’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE revsd: no visible global function definition for ‘install.packages’ revsd : cyl: no visible global function definition for ‘draw.ellipse’ revsd : cyl: no visible global function definition for ‘rect’ revsd : cyl: no visible global function definition for ‘segments’ revsd : cyl1: no visible global function definition for ‘draw.ellipse’ revsd : cyl1: no visible global function definition for ‘rect’ revsd : cyl1: no visible global function definition for ‘segments’ revsd : cyl2: no visible global function definition for ‘rect’ revsd : cyl2: no visible global function definition for ‘segments’ revsd : cyl3: no visible global function definition for ‘rect’ revsd : cyl3: no visible global function definition for ‘segments’ revsd : cyl3: no visible global function definition for ‘draw.ellipse’ revsd : cylSd: no visible global function definition for ‘draw.ellipse’ revsd : cylSd: no visible global function definition for ‘segments’ revsd : cylSD: no visible global function definition for ‘draw.ellipse’ revsd : cylSD: no visible global function definition for ‘segments’ revsd: no visible global function definition for ‘dashboardPage’ revsd: no visible global function definition for ‘dashboardHeader’ revsd: no visible global function definition for ‘dashboardSidebar’ revsd: no visible global function definition for ‘sliderInput’ revsd: no visible global function definition for ‘checkboxInput’ revsd: no visible global function definition for ‘dashboardBody’ revsd: no visible global function definition for ‘fluidRow’ revsd: no visible global function definition for ‘plotOutput’ revsd : server: no visible global function definition for ‘renderPlot’ revsd : server: no visible global function definition for ‘axis’ revsd : server: no visible global function definition for ‘arrows’ revsd : server: no visible global function definition for ‘text’ revsd : server: no visible global function definition for ‘segments’ revsd : server: no visible global function definition for ‘sd’ revsd: no visible global function definition for ‘shinyApp’ Undefined global functions or variables: arrows axis checkboxInput dashboardBody dashboardHeader dashboardPage dashboardSidebar draw.ellipse fluidRow install.packages plotOutput rect renderPlot sd segments shinyApp sliderInput text Consider adding importFrom("graphics", "arrows", "axis", "rect", "segments", "text") importFrom("stats", "sd") importFrom("utils", "install.packages") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [374s/372s] ERROR Running examples in ‘RevSD-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: revsd > ### Title: Visualizing the Standard Deviation via Revolution > ### Aliases: revsd > > ### ** Examples > > revsd(c(10,18,23,30,36)) Installing package into ‘/tmp/RtmpM1VRQG/RLIBS_34405c479ea576’ (as ‘lib’ is unspecified) also installing the dependencies ‘fs’, ‘rappdirs’, ‘Rcpp’, ‘digest’, ‘base64enc’, ‘magrittr’, ‘jquerylib’, ‘memoise’, ‘sass’, ‘cli’, ‘httpuv’, ‘mime’, ‘jsonlite’, ‘xtable’, ‘fontawesome’, ‘htmltools’, ‘R6’, ‘sourcetools’, ‘later’, ‘promises’, ‘crayon’, ‘rlang’, ‘fastmap’, ‘withr’, ‘commonmark’, ‘glue’, ‘bslib’, ‘cachem’, ‘ellipsis’, ‘lifecycle’ * installing *source* package ‘fs’ ... ** package ‘fs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dir.cc -o dir.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error.cc -o error.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file.cc -o file.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fs.cc -o fs.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c getmode.cc -o getmode.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c id.cc -o id.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cc -o init.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c link.cc -o link.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c path.cc -o path.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.cc -o utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/getmode.cc -o unix/getmode.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/setmode.c -o bsd/setmode.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/strmode.c -o bsd/strmode.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/reallocarray.c -o bsd/reallocarray.o (cd libuv-1.44.2 \ && CC="clang-16 " CPPFLAGS="-I/usr/local/include" CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -std=c99" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure --quiet) make --directory=libuv-1.44.2 \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/RtmpM1VRQG/working_dir/RtmpfuIBpI/R.INSTALL34425e311bfea1/fs/src/libuv-1.44.2' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/libuv_la-strtok.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[1]: Leaving directory '/tmp/RtmpM1VRQG/working_dir/RtmpfuIBpI/R.INSTALL34425e311bfea1/fs/src/libuv-1.44.2' clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fs.so dir.o error.o file.o fs.o getmode.o id.o init.o link.o path.o utils.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.44.2/.libs/libuv.a -pthread -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-fs/00new/fs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fs) * installing *source* package ‘rappdirs’ ... ** package ‘rappdirs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c win-path.c -o win-path.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rappdirs.so init.o win-path.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-rappdirs/00new/rappdirs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rappdirs) * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.cpp -o api.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.cpp -o attributes.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c barrier.cpp -o barrier.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c date.cpp -o date.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c module.cpp -o module.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_init.cpp -o rcpp_init.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SpookyV2.cpp -o SpookyV2.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3.c -o blake3.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_dispatch.c -o blake3_dispatch.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_portable.c -o blake3_portable.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32.c -o crc32.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32c.cpp -o crc32c.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32c_portable.cpp -o crc32c_portable.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest.c -o digest.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest2int.c -o digest2int.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pmurhash.c -o pmurhash.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raes.c -o raes.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha2.c -o sha2.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c spooky_serialize.cpp -o spooky_serialize.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xxhash.c -o xxhash.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) * installing *source* package ‘base64enc’ ... ** package ‘base64enc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uriencode.c -o uriencode.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o base64enc.so base64.o uriencode.o utf8.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-base64enc/00new/base64enc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (base64enc) * installing *source* package ‘magrittr’ ... ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pipe.c -o pipe.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) * installing *source* package ‘cli’ ... ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c ansi.c -o ansi.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c inst.c -o inst.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-unix.c -o keypress-unix.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-win.c -o keypress-win.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress.c -o keypress.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress-altrep.c -o progress-altrep.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress.c -o progress.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c thread.c -o thread.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c tty.c -o tty.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vt.c -o vt.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse.c -o vtparse.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse_table.c -o vtparse_table.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c win-utf8.c -o win-utf8.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c winfiles.c -o winfiles.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-cli/00new/cli/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) * installing *source* package ‘mime’ ... ** package ‘mime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rawmatch.c -o rawmatch.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mime.so init.o rawmatch.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-mime/00new/mime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mime) * installing *source* package ‘jsonlite’ ... ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_array.c -o collapse_array.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_object.c -o collapse_object.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_pretty.c -o collapse_pretty.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape_chars.c -o escape_chars.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c integer64_to_na.c -o integer64_to_na.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_datelist.c -o is_datelist.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_recordlist.c -o is_recordlist.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_scalarlist.c -o is_scalarlist.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c modp_numtoa.c -o modp_numtoa.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c null_to_na.c -o null_to_na.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c num_to_char.c -o num_to_char.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c parse.c -o parse.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c prettify.c -o prettify.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c push_parser.c -o push_parser.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c r-base64.c -o r-base64.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c register.c -o register.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c row_collapse.c -o row_collapse.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose_list.c -o transpose_list.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c validate.c -o validate.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl.c -o yajl/yajl.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_buf.c -o yajl/yajl_buf.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_encode.c -o yajl/yajl_encode.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_gen.c -o yajl/yajl_gen.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_lex.c -o yajl/yajl_lex.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_parser.c -o yajl/yajl_parser.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) * installing *source* package ‘xtable’ ... ** package ‘xtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) * installing *source* package ‘R6’ ... ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) * installing *source* package ‘sourcetools’ ... ** package ‘sourcetools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Reader.cpp -o Reader.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Tokenizer.cpp -o Tokenizer.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sourcetools-init.c -o sourcetools-init.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-sourcetools/00new/sourcetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sourcetools) * installing *source* package ‘crayon’ ... ** package ‘crayon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crayon) * installing *source* package ‘rlang’ ... ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c capture.c -o capture.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c internal.c -o internal.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) * installing *source* package ‘fastmap’ ... ** package ‘fastmap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O3 -Wall -pedantic -c fastmap.cpp -o fastmap.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastmap.so fastmap.o init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-fastmap/00new/fastmap/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastmap) * installing *source* package ‘withr’ ... ** package ‘withr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) * installing *source* package ‘commonmark’ ... ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions.c -o extensions.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrapper.c -o wrapper.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark.c -o cmark/cmark.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/node.c -o cmark/node.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/iterator.c -o cmark/iterator.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/blocks.c -o cmark/blocks.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/inlines.c -o cmark/inlines.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/scanners.c -o cmark/scanners.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/utf8.c -o cmark/utf8.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/buffer.c -o cmark/buffer.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/references.c -o cmark/references.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/render.c -o cmark/render.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/man.c -o cmark/man.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/xml.c -o cmark/xml.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/html.c -o cmark/html.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/commonmark.c -o cmark/commonmark.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/latex.c -o cmark/latex.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/arena.c -o cmark/arena.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/linked_list.c -o cmark/linked_list.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plugin.c -o cmark/plugin.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/registry.c -o cmark/registry.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/syntax_extension.c -o cmark/syntax_extension.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plaintext.c -o cmark/plaintext.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/footnotes.c -o cmark/footnotes.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/map.c -o cmark/map.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/autolink.c -o extensions/autolink.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/core-extensions.c -o extensions/core-extensions.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/ext_scanners.c -o extensions/ext_scanners.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/strikethrough.c -o extensions/strikethrough.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/table.c -o extensions/table.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tagfilter.c -o extensions/tagfilter.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tasklist.c -o extensions/tasklist.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) * installing *source* package ‘glue’ ... ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c trim.c -o trim.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) * installing *source* package ‘later’ ... ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c callback_registry.cpp -o callback_registry.o In file included from callback_registry.cpp:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c debug.cpp -o debug.o debug.cpp:31:11: warning: variable 'res' set but not used [-Wunused-but-set-variable] ssize_t res = write(STDERR_FILENO, buf, n); ^ 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later.cpp -o later.o In file included from later.cpp:1: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_posix.cpp -o later_posix.o In file included from later_posix.cpp:9: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ later_posix.cpp:247:13: warning: unused variable 'ret' [-Wunused-variable] ssize_t ret = write(dummy_pipe_in, "a", 1); ^ 2 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_win32.cpp -o later_win32.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timer_posix.cpp -o timer_posix.o In file included from timer_posix.cpp:6: In file included from ./timer_posix.h:8: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_unix.cpp -o timestamp_unix.o In file included from timestamp_unix.cpp:5: In file included from ./timeconv.h:9: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_win32.cpp -o timestamp_win32.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o -pthread -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) * installing *source* package ‘cachem’ ... ** package ‘cachem’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cache.c -o cache.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cachem.so cache.o init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-cachem/00new/cachem/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cachem) * installing *source* package ‘ellipsis’ ... ** package ‘ellipsis’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dots.c -o dots.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ellipsis.so dots.o init.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-ellipsis/00new/ellipsis/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ellipsis) * installing *source* package ‘lifecycle’ ... ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) * installing *source* package ‘memoise’ ... ** package ‘memoise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memoise) * installing *source* package ‘htmltools’ ... ** package ‘htmltools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c template.c -o template.o clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o htmltools.so init.o template.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-htmltools/00new/htmltools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmltools) * installing *source* package ‘promises’ ... ** package ‘promises’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c promise_task.cpp -o promise_task.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) * installing *source* package ‘jquerylib’ ... ** package ‘jquerylib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jquerylib) * installing *source* package ‘sass’ ... ** package ‘sass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /home/hornik/tmp/R/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' using C compiler: ‘Debian clang version 16.0.6 (13)’ using C++ compiler: ‘Debian clang version 16.0.6 (13)’ /home/hornik/tmp/R/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compile.c -o compile.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.cpp -o init.o MAKEFLAGS= CC="clang-16 " CFLAGS="-g -O3 -Wall -pedantic" CXX="clang++-16 -std=gnu++17" AR="ar" LDFLAGS="-Wl,-O1" make -C libsass make[1]: Entering directory '/tmp/RtmpM1VRQG/working_dir/RtmpwLnFeW/R.INSTALL345c2c5b6d2985/sass/src/libsass' clang-16 -g -O3 -Wall -pedantic -O2 -I ./include -fPIC -c -o src/cencode.o src/cencode.c clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast.o src/ast.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_values.o src/ast_values.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_supports.o src/ast_supports.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_cmp.o src/ast_sel_cmp.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_unify.o src/ast_sel_unify.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_super.o src/ast_sel_super.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_weave.o src/ast_sel_weave.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_selectors.o src/ast_selectors.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/context.o src/context.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/constants.o src/constants.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_utils.o src/fn_utils.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_miscs.o src/fn_miscs.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_maps.o src/fn_maps.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_lists.o src/fn_lists.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_colors.o src/fn_colors.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_numbers.o src/fn_numbers.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_strings.o src/fn_strings.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_selectors.o src/fn_selectors.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/color_maps.o src/color_maps.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/environment.o src/environment.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_fwd_decl.o src/ast_fwd_decl.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/bind.o src/bind.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/file.o src/file.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util.o src/util.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util_string.o src/util_string.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/json.o src/json.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/units.o src/units.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/values.o src/values.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/plugins.o src/plugins.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source.o src/source.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/position.o src/position.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/lexer.o src/lexer.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser.o src/parser.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser_selectors.o src/parser_selectors.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/prelexer.o src/prelexer.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval.o src/eval.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval_selectors.o src/eval_selectors.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/expand.o src/expand.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/listize.o src/listize.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/cssize.o src/cssize.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extender.o src/extender.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extension.o src/extension.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/stylesheet.o src/stylesheet.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/output.o src/output.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/inspect.o src/inspect.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/emitter.o src/emitter.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/check_nesting.o src/check_nesting.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/remove_placeholders.o src/remove_placeholders.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass.o src/sass.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_values.o src/sass_values.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_context.o src/sass_context.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_functions.o src/sass_functions.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass2scss.o src/sass2scss.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/backtrace.o src/backtrace.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/operators.o src/operators.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast2c.o src/ast2c.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/c2ast.o src/c2ast.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/to_value.o src/to_value.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source_map.o src/source_map.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/error_handling.o src/error_handling.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/allocator.o src/memory/allocator.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/shared_ptr.o src/memory/shared_ptr.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/utf8_string.o src/utf8_string.cpp clang++-16 -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/base64vlq.o src/base64vlq.cpp mkdir lib ar rcvs lib/libsass.a src/cencode.o src/ast.o src/ast_values.o src/ast_supports.o src/ast_sel_cmp.o src/ast_sel_unify.o src/ast_sel_super.o src/ast_sel_weave.o src/ast_selectors.o src/context.o src/constants.o src/fn_utils.o src/fn_miscs.o src/fn_maps.o src/fn_lists.o src/fn_colors.o src/fn_numbers.o src/fn_strings.o src/fn_selectors.o src/color_maps.o src/environment.o src/ast_fwd_decl.o src/bind.o src/file.o src/util.o src/util_string.o src/json.o src/units.o src/values.o src/plugins.o src/source.o src/position.o src/lexer.o src/parser.o src/parser_selectors.o src/prelexer.o src/eval.o src/eval_selectors.o src/expand.o src/listize.o src/cssize.o src/extender.o src/extension.o src/stylesheet.o src/output.o src/inspect.o src/emitter.o src/check_nesting.o src/remove_placeholders.o src/sass.o src/sass_values.o src/sass_context.o src/sass_functions.o src/sass2scss.o src/backtrace.o src/operators.o src/ast2c.o src/c2ast.o src/to_value.o src/source_map.o src/error_handling.o src/memory/allocator.o src/memory/shared_ptr.o src/utf8_string.o src/base64vlq.o a - src/cencode.o a - src/ast.o a - src/ast_values.o a - src/ast_supports.o a - src/ast_sel_cmp.o a - src/ast_sel_unify.o a - src/ast_sel_super.o a - src/ast_sel_weave.o a - src/ast_selectors.o a - src/context.o a - src/constants.o a - src/fn_utils.o a - src/fn_miscs.o a - src/fn_maps.o a - src/fn_lists.o a - src/fn_colors.o a - src/fn_numbers.o a - src/fn_strings.o a - src/fn_selectors.o a - src/color_maps.o a - src/environment.o a - src/ast_fwd_decl.o a - src/bind.o a - src/file.o a - src/util.o a - src/util_string.o a - src/json.o a - src/units.o a - src/values.o a - src/plugins.o a - src/source.o a - src/position.o a - src/lexer.o a - src/parser.o a - src/parser_selectors.o a - src/prelexer.o a - src/eval.o a - src/eval_selectors.o a - src/expand.o a - src/listize.o a - src/cssize.o a - src/extender.o a - src/extension.o a - src/stylesheet.o a - src/output.o a - src/inspect.o a - src/emitter.o a - src/check_nesting.o a - src/remove_placeholders.o a - src/sass.o a - src/sass_values.o a - src/sass_context.o a - src/sass_functions.o a - src/sass2scss.o a - src/backtrace.o a - src/operators.o a - src/ast2c.o a - src/c2ast.o a - src/to_value.o a - src/source_map.o a - src/error_handling.o a - src/memory/allocator.o a - src/memory/shared_ptr.o a - src/utf8_string.o a - src/base64vlq.o make[1]: Leaving directory '/tmp/RtmpM1VRQG/working_dir/RtmpwLnFeW/R.INSTALL345c2c5b6d2985/sass/src/libsass' clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sass.so compile.o init.o ./libsass/lib/libsass.a -L/home/hornik/tmp/R/lib -lR /home/hornik/tmp/R/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-sass/00new/sass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sass) * installing *source* package ‘httpuv’ ... ** package ‘httpuv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ using C++ compiler: ‘Debian clang version 16.0.6 (13)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports-legacy.cpp -o RcppExports-legacy.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callback.cpp -o callback.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callbackqueue.cpp -o callbackqueue.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-unix.cpp -o filedatasource-unix.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-win.cpp -o filedatasource-win.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c fs.cpp -o fs.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c gzipdatasource.cpp -o gzipdatasource.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http.cpp -o http.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httprequest.cpp -o httprequest.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpresponse.cpp -o httpresponse.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpuv.cpp -o httpuv.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c mime.cpp -o mime.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c socket.cpp -o socket.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c staticpath.cpp -o staticpath.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c thread.cpp -o thread.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c timegm.cpp -o timegm.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c uvutil.cpp -o uvutil.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c webapplication.cpp -o webapplication.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-base.cpp -o websockets-base.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hixie76.cpp -o websockets-hixie76.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hybi03.cpp -o websockets-hybi03.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-ietf.cpp -o websockets-ietf.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets.cpp -o websockets.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c winutils.cpp -o winutils.o cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4 cd libuv; \ if ! command -v automake >/dev/null 2>&1 ; then \ echo "automake not found. Touching files so configure will not try to run automake."; \ touch aclocal.m4; \ touch -r aclocal.m4 configure Makefile.in; \ else \ echo "automake found. Running autoupdate and autogen.sh."; \ autoupdate; \ sh autogen.sh; \ fi; \ chmod +x configure; \ CC="clang-16 " CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -DNDEBUG" CPPFLAGS="-I/usr/local/include" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure "--quiet" automake found. Running autoupdate and autogen.sh. + libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltversion.m4' + aclocal -I m4 + autoconf configure.ac:46: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... m4/ax_pthread.m4:88: AX_PTHREAD is expanded from... configure.ac:46: the top level + automake --add-missing --copy make --directory=libuv \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/RtmpM1VRQG/working_dir/RtmpUblpaw/R.INSTALL345cf76e4cbb7f/httpuv/src/libuv' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo src/unix/thread.c:195:24: warning: comparison of integers of different signs: 'rlim_t' (aka 'unsigned long') and 'long' [-Wsign-compare] if (lim.rlim_cur >= PTHREAD_STACK_MIN) ~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ src/unix/thread.c:243:20: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'long' [-Wsign-compare] if (stack_size < PTHREAD_STACK_MIN) ~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ 2 warnings generated. CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[1]: Leaving directory '/tmp/RtmpM1VRQG/working_dir/RtmpUblpaw/R.INSTALL345cf76e4cbb7f/httpuv/src/libuv' clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c base64/base64.cpp -o base64/base64.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o httpuv.so RcppExports-legacy.o RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o ./libuv/.libs/libuv.a ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) * installing *source* package ‘fontawesome’ ... ** package ‘fontawesome’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontawesome) * installing *source* package ‘bslib’ ... ** package ‘bslib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bslib) * installing *source* package ‘shiny’ ... ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) Installing package into ‘/tmp/RtmpM1VRQG/RLIBS_34405c479ea576’ (as ‘lib’ is unspecified) * installing *source* package ‘shinydashboard’ ... ** package ‘shinydashboard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinydashboard) Installing package into ‘/tmp/RtmpM1VRQG/RLIBS_34405c479ea576’ (as ‘lib’ is unspecified) * installing *source* package ‘plotrix’ ... ** package ‘plotrix’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotrix) Installing package into ‘/tmp/RtmpM1VRQG/RLIBS_34405c479ea576’ (as ‘lib’ is unspecified) also installing the dependencies ‘BH’, ‘anytime’ * installing *source* package ‘BH’ ... ** package ‘BH’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BH) * installing *source* package ‘anytime’ ... ** package ‘anytime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (13)’ using C++11 clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/Rcpp/include' -I'/tmp/RtmpM1VRQG/RLIBS_34405c479ea576/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_RTTI -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c anytime.cpp -o anytime.o clang++-16 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o anytime.so RcppExports.o anytime.o -L/home/hornik/tmp/R/lib -lR installing to /tmp/RtmpM1VRQG/RLIBS_34405c479ea576/00LOCK-anytime/00new/anytime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anytime) * installing *source* package ‘shinyWidgets’ ... ** package ‘shinyWidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyWidgets) Error in dashboardPage(skin = "yellow", dashboardHeader(title = "RMSD from ECDF"), : could not find function "dashboardPage" Calls: revsd Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs