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Type 'q()' to quit R. > library(testthat) > library(ResultModelManager) Loading required package: R6 Loading required package: DatabaseConnector > > test_check("ResultModelManager") Connecting using SQLite driver trying URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar' Content type 'application/java-archive' length 1089312 bytes (1.0 MB) ================================================== downloaded 1.0 MB DatabaseConnector postgresql JDBC driver downloaded to 'D:\temp\2025_09_15_23_30_17_6519\Rtmp8Cxh3v\file115384cbd6abe'. Connecting using SQLite driver | | | 0% | |=================================== | 50% | |======================================================================| 100% Executing SQL took 0.01 secs Connecting using SQLite driver Closing database connection Connecting using SQLite driver Closing database connection | | | 0% | |======================================================================| 100% Executing SQL took 0.00399 secs Connecting using SQLite driver | | | 0% | |=================================== | 50% | |======================================================================| 100% Executing SQL took 0.00459 secs Using DatabaseConnector jdbc driver. Initializing pooled connection Connecting using SQLite driver Initializing pooled connection Connecting using SQLite driver | | | 0% | |======================================================================| 100% Executing SQL took 0.00415 secs Migrator using SQL files in ResultModelManager Connecting using SQLite driver Creating migrations table Executing SQL took 0.00401 secs Migrations table created Executing migration: Migration_1-example.sql Executing SQL took 0.0039 secs Saving migration: Migration_1-example.sql Executing SQL took 0.0037 secs Migration complete Migration_1-example.sql Executing migration: Migration_2-MultiPlatformExample.sql Executing SQL took 0.00551 secs Saving migration: Migration_2-MultiPlatformExample.sql Executing SQL took 0.00348 secs Migration complete Migration_2-MultiPlatformExample.sql Closing database connection Connecting using SQLite driver Migrator using SQL files in ResultModelManager Connecting using SQLite driver Closing database connection Migrator using SQL files in directory structure Connecting using SQLite driver Creating migrations table Executing SQL took 0.00371 secs Migrations table created Executing migration: Migration_1-example.sql Executing SQL took 0.00601 secs Saving migration: Migration_1-example.sql Executing SQL took 0.00401 secs Migration complete Migration_1-example.sql Executing migration: Migration_2-MultiPlatformExample.sql Executing SQL took 0.00559 secs Saving migration: Migration_2-MultiPlatformExample.sql Executing SQL took 0.00365 secs Migration complete Migration_2-MultiPlatformExample.sql Closing database connection Connecting using SQLite driver Migrator using SQL files in directory structure Column databaseId in table foo in results folder foo.zip is of type character, but was expecting bigint. Attempting to convert. Column charField in table foo in results folder foo.zip is of type numeric, but was expecting varchar. Attempting to convert. Column dateField in table foo in results folder foo.zip is of type character, but was expecting date. Attempting to convert. Connecting using SQLite driver | | | 0% | |============ | 17% | |======================= | 33% | |=================================== | 50% | |=============================================== | 67% | |========================================================== | 83% | |======================================================================| 100% Executing SQL took 0.00534 secs Inserting data took 0.0135 secs Executing SQL took 0.00308 secs Inserting data took 0.0434 secs Executing SQL took 0.0029 secs Inserting data took 0.0102 secs Executing SQL took 0.00311 secs Using DatabaseConnector jdbc driver. Connecting using SQLite driver Using DatabaseConnector jdbc driver. Initializing pooled connection Connecting using SQLite driver Connecting using SQLite driver Executing SQL took 0.00361 secs Executing SQL took 0.00302 secs Closing database connection null/na primary keys found duplicate primary keys found Connecting using SQLite driver Inserting data took 0.0553 secs Connecting using SQLite driver | | | 0% | |============ | 17% | |======================= | 33% | |=================================== | 50% | |=============================================== | 67% | |========================================================== | 83% | |======================================================================| 100% Executing SQL took 0.0102 secs Connecting using SQLite driver [ FAIL 3 | WARN 0 | SKIP 16 | PASS 133 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • On CRAN (7): 'test-DataMigrationManager.R:70:3', 'test-DataMigrationManager.R:93:3', 'test-PyFunctions.R:2:3', 'test-PyFunctions.R:39:3', 'test-PyFunctions.R:112:3', 'test-PyFunctions.R:167:3', 'test-QueryNamespace.R:70:3' • results db not available (9): 'test-DataModel.R:18:3', 'test-DataModel.R:56:3', 'test-DataModel.R:145:3', 'test-DataModel.R:200:3', 'test-DataModel.R:239:3', 'test-DataModelFunctions.R:93:3', 'test-PooledConnection.R:34:3', 'test-ResultExportManager.R:131:3', 'test-Utils.R:15:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-DataModelFunctions.R:230:3'): Delete primary key rows function SQLITE ── `result` (`actual`) not identical to `keptRows` (`expected`). `names(actual)`: "id" "id_2" `names(expected)`: "ID" "ID_2" `actual$id` is a double vector (5, 7) `expected$id` is absent `actual$id_2` is a double vector (6, 8) `expected$id_2` is absent `actual$ID` is absent `expected$ID` is a double vector (5, 7) `actual$ID_2` is absent `expected$ID_2` is a double vector (6, 8) ── Error ('test-QueryNamespace.R:49:5'): test setConnectionHandler and getConnectionHandler functions ── Error in `eval_bare(quo_get_expr(.quo), quo_get_env(.quo))`: attempt to apply non-function Backtrace: ▆ 1. └─testthat::expect_warning(cohortNamespace$finalize()) at test-QueryNamespace.R:49:5 2. └─testthat:::expect_condition_matching(...) 3. └─testthat:::quasi_capture(...) 4. ├─testthat (local) .capture(...) 5. │ └─base::withCallingHandlers(...) 6. └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) ── Failure ('test-ResultExportManager.R:70:3'): exportDataFrame method exports data frame correctly ── `exportManager$exportDataFrame(df2, "table1", append = TRUE)` did not throw the expected error. [ FAIL 3 | WARN 0 | SKIP 16 | PASS 133 ] Error: Test failures Execution halted