* using log directory 'd:/RCompile/CRANincoming/R-devel/ResIN.Rcheck'
* using R Under development (unstable) (2024-10-01 r87205 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ResIN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ResIN' version '2.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Philip Warncke <pwarncke@live.unc.edu>'

Found the following (possibly) invalid URLs:
  URL: https://cran.r-project.org/web/packages/ResIN/index.html
    From: inst/doc/ResIN-VIGNETTE.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://www.journals.uchicago.edu/doi/abs/10.1086/691274
    From: inst/doc/ResIN-VIGNETTE.html
    Status: 403
    Message: Forbidden
The canonical URL of the CRAN page for a package is 
  https://CRAN.R-project.org/package=pkgname

Size of tarball: 14753493 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .Rhistory (philip's conflicted copy 2024-10-03)
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  .Rhistory (philip's conflicted copy 2024-10-03)
* checking for portable file names ... WARNING
Found the following file with a non-portable file name:
  .Rhistory (philip's conflicted copy 2024-10-03)
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'ResIN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'resin_sticker.png'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s] NOTE
ResIN_boots_extract : search_list: no visible binding for '<<-'
  assignment to 'match_counter'
ResIN_boots_extract : search_list: no visible binding for global
  variable 'match_counter'
Undefined global functions or variables:
  match_counter

Found the following assignments to the global environment:
File 'ResIN/R/ResIN_boots_extract.R':
  assign("match_counter", 0, envir = .GlobalEnv)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [52s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs