test_that("test 1", { setupInitial <- setupTest() # on.exit(endTest(setupInitial)) isDev <- getOption("Require.isDev") ### cover CRAN in case of having a environment variable set, which TRAVIS seems to origCRAN_REPO <- Sys.getenv("CRAN_REPO") Sys.unsetenv("CRAN_REPO") isInteractive <- function() FALSE assignInNamespace("isInteractive", isInteractive, ns = "Require") out <- getCRANrepos("") Sys.setenv("CRAN_REPO" = origCRAN_REPO) repos <- getCRANrepos("") testthat::expect_true({ is.character(repos) }) testthat::expect_true({ all(nchar(repos) > 0) # may have binary also }) # # cannot open file 'startup.Rs': No such file or directory # # suggested solution https://stackoverflow.com/a/27994299/3890027 # Sys.setenv("R_TESTS" = "") # Sys.setenv("R_REMOTES_UPGRADE" = "never") dir1 <- Require:::rpackageFolder(Require:::tempdir3("test1")) dir1 <- Require::checkPath(dir1, create = TRUE) (mess <- capture_messages(out <- Require::Require("fpCompare (<= 1.2.3)", standAlone = TRUE, libPaths = dir1, # quiet = TRUE, returnDetails = TRUE ))) |> capture_warnings() -> warns skip_if_offline() if (length(warns)) expect_true(all(grepl("was built under", warns))) testthat::expect_true({ data.table::is.data.table(attr(out, "Require")) }) testthat::expect_true({ isTRUE(out) }) isInstalled <- tryCatch( { out <- find.package("fpCompare", lib.loc = dir1) if (length(out)) TRUE else FALSE }, error = function(x) FALSE ) testthat::expect_true({ isTRUE(isInstalled) }) if (!getOption("Require.usePak")) { out <- try( detachAll( c("Require", "fpCompare", "sdfd", "reproducible"), dontTry = dontDetach()), silent = TRUE) |> suppressWarnings() if (!is(out, "try-error")) { expectedPkgs <- c(sdfd = 3, fpCompare = 2, Require = 1, data.table = 1) keep <- intersect(names(expectedPkgs), names(out)) out <- out[keep] expect_identical(sort(out), sort(expectedPkgs)) expect_identical(names(out)[out == 2], "fpCompare") } } # detach("package:fpCompare", unload = TRUE) remove.packages("fpCompare", lib = dir1) |> suppressMessages() # Try older version if (identical(tolower(Sys.getenv("CI")), "true") || # travis isDevAndInteractive || # interactive identical(Sys.getenv("NOT_CRAN"), "true")) { # CTRL-SHIFT-E dir2 <- rpackageFolder(tempdir3()) dir2 <- checkPath(dir2, create = TRUE) pvWant <- "0.2.2" warns <- capture_warnings( inst <- Install(paste0("fpCompare (<=", pvWant, ")"), standAlone = TRUE, libPaths = dir2, dependencies = FALSE, returnDetails = TRUE ) ) fpC <- "fpCompare" pv <- packVer(fpC, dir2) # pv <- DESCRIPTIONFileVersionV(file.path(dir2, "fpCompare/DESCRIPTION")) # pv <- packageVersion(vers, lib.loc = dir2) testthat::expect_true({ pv <= pvWant }) # Test snapshot file orig <- setLibPaths(dir2, standAlone = TRUE, updateRprofile = FALSE) pkgSnapFile <- tempfile() pkgSnapshot(pkgSnapFile, libPaths = .libPaths()[-length(.libPaths())]) pkgSnapFileRes <- data.table::fread(pkgSnapFile) dir6 <- Require:::rpackageFolder(Require::tempdir2("test6")) dir6 <- Require::checkPath(dir6, create = TRUE) warns <- capture_warnings( out <- Require::Require( packageVersionFile = pkgSnapFile, libPaths = dir6, quiet = TRUE, install = "force" ) ) if (isTRUE(getOption("Require.usePak"))) { okWarn <- grepl(.txtPakCurrentlyPakNoSnapshots, warns) expect_true(okWarn) } vers2 <- packVer(fpC, dir2) vers6 <- packVer(fpC, dir6) # # vers2 <- DESCRIPTIONFileVersionV(file.path(dir2, "fpCompare/DESCRIPTION")) # vers6 <- DESCRIPTIONFileVersionV(file.path(dir6, "fpCompare/DESCRIPTION")) testthat::expect_equal(vers2, vers6) remove.packages("fpCompare", lib = dir2) |> suppressMessages() remove.packages("fpCompare", lib = dir6) |> suppressMessages() setLibPaths(orig, updateRprofile = FALSE) # Test snapshot file with no args # on CRAN and GA, this is likely empty prevDir <- setwd(Require::tempdir2("test11")) out <- pkgSnapshot() pkgSnapFileRes <- data.table::fread(eval(formals("pkgSnapshot")$packageVersionFile), colClasses = "character" ) # if empty, they become logical testthat::expect_true({ is.data.frame(out) }) testthat::expect_true({ file.exists(eval(formals("pkgSnapshot")$packageVersionFile)) }) out1 <- data.table::as.data.table(out) testthat::expect_true({ isTRUE(all.equal(out1[], pkgSnapFileRes[], check.attributes = FALSE)) }) #warns <- capture_warnings( out3 <- pkgSnapshot2() #) #if (isTRUE(getOption("Require.usePak"))) { # browser() # okWarn <- grepl(.txtPakCurrentlyPakNoSnapshots, warns) # expect_true(okWarn) #} testthat::expect_true(is(out3, "character")) setwd(prevDir) # Check for packageVersionFile = FALSE warns <- capture_warnings( mess11 <- capture.output(type = "message", { outInner <- Require(packageVersionFile = FALSE, verbose = 5, quiet = TRUE) }) ) if (isTRUE(getOption("Require.usePak"))) { okWarn <- grepl(.txtPakCurrentlyPakNoSnapshots, warns) expect_true(okWarn) } testthat::expect_true(any(grepl(NoPkgsSupplied, mess11))) testthat::expect_true(isFALSE(outInner)) # Skip on CRAN dir3 <- Require:::rpackageFolder(tempdir3()) dir3 <- Require::checkPath(dir3, create = TRUE) # dir.create(dir3, recursive = TRUE, showWarnings = FALSE) # try({ # This next one is correct version, but it was installed from CRAN, so it fails # the GH SHA test (i.e., one has the SHA the other does not); so # installs from source Require:::linkOrCopyPackageFilesInner(c("Require", "sys", "data.table", "gitcreds"), Sys.getenv("R_LIBS_USER"),toLib = dir3) warns <- capture_warnings( inst <- suppressMessages( Require::Require("PredictiveEcology/fpCompare", install = "force", returnDetails = TRUE, # quiet = TRUE, require = FALSE, standAlone = TRUE, libPaths = dir3 ) ) ) if (isTRUE(any(grepl(msgStripColor(messageCantInstallNoInternet("")), msgStripColor(warns))))) skip("Flaky internet") inst22 <- suppressMessages( Require::Require("PredictiveEcology/fpCompare", install = "force", returnDetails = TRUE, # quiet = TRUE, require = FALSE, standAlone = TRUE, libPaths = dir3 ) ) attrOut <- capture.output(type = "message", Require:::messageDF(attr(inst, "Require"))) # }, silent = TRUE) pkgs <- c("fpCompare") isInstalled <- tryCatch( { out <- find.package(pkgs, lib.loc = dir3) if (length(out)) TRUE else FALSE }, error = function(x) FALSE ) expect_match(normalizePath(out, winslash = "/"), normalizePath(dir3, winslash = "/")) # testthat::expect_true({ # isTRUE(isInstalled) # }) # Try github with version dir4 <- Require:::rpackageFolder(Require::tempdir2("test4")) dir4 <- Require::checkPath(dir4, create = TRUE) err <- capture_error( warns <- capture_warnings( inst <- Require::Require("PredictiveEcology/fpCompare (>=2.0.0)", quiet = TRUE, require = FALSE, standAlone = FALSE, libPaths = dir4 ) ) ) test <- testWarnsInUsePleaseChange(warns) testthat::expect_true({ isFALSE(inst) }) err <- capture_error( warns <- capture_warnings( mess <- utils::capture.output( { inst <- Require::Require("PredictiveEcology/fpCompare (>=2.0.0)", verbose = 5, quiet = TRUE, require = FALSE, standAlone = FALSE, libPaths = dir4 ) }, type = "message" ) ) ) test <- testWarnsInUsePleaseChange(warns) if (!getOption("Require.usePak")) { testthat::expect_true({ length(mess) > 0 }) expect_match(paste(mess, collapse = " "), .txtCouldNotBeInstalled) # testthat::expect_true({ # sum(grepl("could not be installed", mess)) == 1 # }) } unlink(dirname(dir3), recursive = TRUE) unlink(dirname(dir4), recursive = TRUE) } # Code coverage skip_on_cran() # if (isDev) { # i.e., GA, R CMD check etc. # Issue 87 try(remove.packages("reproducible"), silent = TRUE) |> suppressMessages() Require::cacheClearPackages("reproducible", ask = FALSE) # just in case some previous one had the bug ap <- available.packagesCached(repos = getOption("repos"), purge = FALSE, type = "both") curVer <- unique(ap[Package %in% "reproducible"]$Version) Require::Install(paste0("reproducible (==", curVer, ")")) # installs current CRAN version, which is older than SHA below Require::Install("reproducible") |> suppressWarnings() # "package 'reproducible' was built under ..." ... load it warnsReq <- capture_warnings(Require::Install("Require")) (Require::Install(c("CeresBarros/reproducible@51ecfd2b1b9915da3bd012ce23f47d4b98a9f212 (HEAD)"))) |> capture_warnings() -> warns test <- testWarnsInUsePleaseChange(warns) expect_true(test) # on.exit({ # try(out <- detachAll(c("Require", "fpCompare", "sdfd", "reproducible", "digest"), # dontTry = dontDetach()) # , silent = TRUE) |> # suppressWarnings() |> suppressMessages() # # unloadNamespace("package:fpCompare") # # try(detach("package:reproducible", unload = TRUE), silent = TRUE) # }, add = TRUE) vers <- packVer("reproducible", .libPaths()[1]) # vers <- DESCRIPTIONFileVersionV(file.path(.libPaths()[1], "reproducible/DESCRIPTION")) testthat::expect_equal(vers, "2.0.2.9001") # # detach("package:reproducible", unload = TRUE); unloadNamespace("package:fpCompare") # now installs correct SHA which is 2.0.2.9001 warnsHere <- capture_warnings( # "package 'reproducible' was built under ... Require::Install(c("CeresBarros/reproducible@51ecfd2b1b9915da3bd012ce23f47d4b98a9f212 (HEAD)")) ) vers <- packVer("reproducible", .libPaths()[1]) # vers <- DESCRIPTIONFileVersionV(file.path(.libPaths()[1], "reproducible/DESCRIPTION")) testthat::expect_equal(vers, "2.0.2.9001") # was incorrectly 2.0.2 from CRAN prior to PR #87 # End issue 87 suggests <- getOption("Require.packagesLeaveAttached") if (!getOption("Require.usePak")) { out <- try( detachAll(c("Require", "fpCompare", "sdfd", "reproducible"), dontTry = unique(c(suggests, dontDetach()))), silent = TRUE) |> suppressWarnings() } # detach("package:reproducible", unload = TRUE) #### MuMIn is currently failing to build from source if (FALSE) { pkg <- c("r-forge/mumin/pkg", "Require") names(pkg) <- c("MuMIn", "") out <- Require(pkg, install = FALSE, require = FALSE) testthat::expect_true({ isFALSE(all(out)) }) } # Try a package taken off CRAN reallyOldPkg <- "knn" out <- Require(reallyOldPkg, require = FALSE) ip <- data.table::as.data.table(installed.packages()) testthat::expect_true(NROW(ip[Package == reallyOldPkg]) == 1) out <- dlGitHubDESCRIPTION(data.table::data.table(packageFullName = "r-forge/mumin/pkg")) testthat::expect_true({ data.table::is.data.table(out) }) testthat::expect_true({ !is.null(out[["DESCFile"]]) }) testthat::expect_true({ file.exists(out[["DESCFile"]]) }) out <- dlGitHubDESCRIPTION(pkg = character()) testthat::expect_true({ length(out) == 0 }) # Trigger the save available.packages and archiveAvailable # warn <- tryCatch(out <- Require("Require (>=0.0.1)", dependencies = FALSE, # install = "force"), # error = function(x) x) # warn <- tryCatch(out <- Require("Require (>=0.0.1)", dependencies = FALSE, # install = "force"), # error = function(x) x) if (isDevAndInteractive) { warn <- tryCatch( { out <- Require("A3 (<=0.0.1)", dependencies = FALSE, install = "force") }, warning = function(x) x ) warn <- tryCatch( { out <- Require("A3 (<=0.0.1)", dependencies = FALSE, install = "force") }, warning = function(x) x ) } # Test substitute(packages) suppressWarnings(try(remove.packages(c("magrittr", "crayon", "fpCompare", "lobstr")), silent = TRUE)) |> suppressMessages() verToCompare <- "2.0.2" cacheClearPackages(c("magrittr", "crayon"), ask = FALSE) # The warning is about "package ‘Require’ is in use and will not be installed" pkgsHere <- c("magrittr", "crayon", "lobstr") pkgdeps <- pkgDep(pkgsHere) out2 <- Require::Install(pkgsHere) |> capture_warnings() -> warns test <- testWarnsInUsePleaseChange(warns) expect_true(test) # testthat::expect_true(packageVersion("SpaDES") >= verToCompare) try(remove.packages(pkgsHere)) |> suppressMessages() cacheClearPackages(pkgsHere, ask = FALSE) a <- list(pkg = "fpCompare") warns <- capture_warnings( out <- Require::Install(pkgsHere, returnDetails = TRUE) ) vers <- packVer("magrittr", .libPaths()[1]) # vers <- DESCRIPTIONFileVersionV(file.path(.libPaths()[1], "magrittr/DESCRIPTION")) testthat::expect_true(vers != verToCompare) warns <- capture_warnings( out <- Require::Install(pkgsHere, returnDetails = TRUE) ) vers <- packVer("magrittr", .libPaths()[1]) # vers <- DESCRIPTIONFileVersionV(file.path(.libPaths()[1], "magrittr/DESCRIPTION")) testthat::expect_true(vers > verToCompare) # } })